View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18910_low_5 (Length: 366)

Name: NF18910_low_5
Description: NF18910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18910_low_5
NF18910_low_5
[»] chr5 (13 HSPs)
chr5 (125-353)||(3714695-3714924)
chr5 (18-87)||(25175116-25175185)
chr5 (50-87)||(18433313-18433350)
chr5 (52-87)||(25116060-25116095)
chr5 (54-87)||(41382912-41382945)
chr5 (53-87)||(18433035-18433069)
chr5 (53-87)||(22428953-22428987)
chr5 (53-87)||(22429196-22429230)
chr5 (54-84)||(23011383-23011413)
chr5 (53-87)||(26020470-26020504)
chr5 (51-84)||(5187828-5187861)
chr5 (50-87)||(33324835-33324872)
chr5 (55-87)||(31569926-31569958)
[»] scaffold0802 (2 HSPs)
scaffold0802 (18-87)||(1138-1207)
scaffold0802 (18-87)||(1385-1454)
[»] chr8 (23 HSPs)
chr8 (18-87)||(15155903-15155972)
chr8 (50-87)||(9465871-9465908)
chr8 (50-87)||(18020085-18020122)
chr8 (50-87)||(34313783-34313820)
chr8 (50-87)||(37752413-37752450)
chr8 (18-84)||(12281391-12281457)
chr8 (50-84)||(41662130-41662164)
chr8 (18-87)||(43245891-43245960)
chr8 (50-87)||(15156182-15156219)
chr8 (50-87)||(16928962-16928999)
chr8 (50-87)||(16929239-16929276)
chr8 (50-85)||(74981-75016)
chr8 (18-87)||(765754-765823)
chr8 (53-87)||(3463660-3463694)
chr8 (53-87)||(22851410-22851444)
chr8 (50-84)||(23123514-23123548)
chr8 (18-87)||(41662368-41662437)
chr8 (51-84)||(9930837-9930870)
chr8 (50-87)||(43162253-43162290)
chr8 (50-87)||(43162536-43162573)
chr8 (50-87)||(43246173-43246210)
chr8 (54-87)||(43598756-43598789)
chr8 (51-87)||(7127672-7127708)
[»] chr6 (14 HSPs)
chr6 (18-87)||(18241874-18241943)
chr6 (18-87)||(3403954-3404023)
chr6 (18-86)||(11656747-11656815)
chr6 (50-87)||(12714451-12714488)
chr6 (50-87)||(33972013-33972050)
chr6 (51-87)||(30388360-30388396)
chr6 (53-87)||(3403737-3403771)
chr6 (53-87)||(10039695-10039729)
chr6 (18-87)||(18242121-18242190)
chr6 (18-87)||(21031998-21032067)
chr6 (57-87)||(31598732-31598762)
chr6 (50-87)||(3825546-3825583)
chr6 (50-87)||(13579648-13579685)
chr6 (58-87)||(21032285-21032314)
[»] chr4 (15 HSPs)
chr4 (18-87)||(13198871-13198940)
chr4 (18-87)||(3930198-3930267)
chr4 (50-84)||(16555538-16555572)
chr4 (50-87)||(3930477-3930514)
chr4 (50-87)||(22681594-22681631)
chr4 (53-84)||(8488211-8488242)
chr4 (139-210)||(41754530-41754600)
chr4 (50-84)||(11241412-11241446)
chr4 (18-87)||(39415244-39415313)
chr4 (50-87)||(7603163-7603200)
chr4 (50-87)||(18077199-18077236)
chr4 (53-86)||(24775783-24775816)
chr4 (50-87)||(27304736-27304773)
chr4 (50-87)||(35393773-35393810)
chr4 (50-87)||(49178813-49178850)
[»] chr3 (11 HSPs)
chr3 (18-87)||(10293874-10293943)
chr3 (18-87)||(20968738-20968807)
chr3 (18-87)||(10293628-10293697)
chr3 (52-87)||(47871121-47871156)
chr3 (18-87)||(18875156-18875225)
chr3 (54-87)||(4947279-4947312)
chr3 (53-86)||(9026756-9026789)
chr3 (53-86)||(14015964-14015997)
chr3 (56-85)||(17441066-17441095)
chr3 (54-87)||(18874902-18874935)
chr3 (51-87)||(17372318-17372354)
[»] chr1 (10 HSPs)
chr1 (18-84)||(17518325-17518391)
chr1 (18-87)||(47955573-47955642)
chr1 (51-87)||(8108741-8108777)
chr1 (50-87)||(13589656-13589693)
chr1 (50-87)||(31848189-31848226)
chr1 (50-87)||(41083208-41083245)
chr1 (18-87)||(47955326-47955395)
chr1 (50-87)||(1176856-1176893)
chr1 (50-87)||(17518599-17518636)
chr1 (55-87)||(22149701-22149733)
[»] scaffold0110 (2 HSPs)
scaffold0110 (18-87)||(45556-45625)
scaffold0110 (18-87)||(45772-45841)
[»] chr2 (17 HSPs)
chr2 (18-87)||(30191190-30191259)
chr2 (18-86)||(40469448-40469516)
chr2 (50-86)||(15920799-15920835)
chr2 (18-84)||(32672865-32672931)
chr2 (18-87)||(40469694-40469763)
chr2 (50-87)||(11883643-11883680)
chr2 (50-87)||(11883923-11883960)
chr2 (55-87)||(6171175-6171207)
chr2 (53-85)||(20347185-20347217)
chr2 (50-86)||(26737501-26737537)
chr2 (53-87)||(24832351-24832385)
chr2 (18-87)||(30190943-30191012)
chr2 (53-86)||(7591850-7591883)
chr2 (50-87)||(20347461-20347498)
chr2 (55-87)||(6495723-6495755)
chr2 (51-87)||(15321410-15321446)
chr2 (51-87)||(32673141-32673177)
[»] chr7 (13 HSPs)
chr7 (50-87)||(3687374-3687411)
chr7 (18-84)||(9412046-9412112)
chr7 (53-87)||(5349733-5349767)
chr7 (50-87)||(8953886-8953923)
chr7 (53-84)||(35080223-35080254)
chr7 (51-81)||(5349489-5349519)
chr7 (18-87)||(9412290-9412359)
chr7 (50-87)||(3687653-3687690)
chr7 (54-87)||(6908232-6908265)
chr7 (50-87)||(13772898-13772935)
chr7 (50-87)||(29291826-29291863)
chr7 (52-85)||(34235977-34236010)
chr7 (54-87)||(38191566-38191599)
[»] scaffold0001 (1 HSPs)
scaffold0001 (17-87)||(438950-439020)
[»] scaffold0319 (2 HSPs)
scaffold0319 (18-87)||(6662-6731)
scaffold0319 (50-87)||(6414-6451)
[»] scaffold0192 (1 HSPs)
scaffold0192 (18-87)||(25334-25403)
[»] scaffold0009 (1 HSPs)
scaffold0009 (50-87)||(205706-205743)
[»] scaffold0002 (1 HSPs)
scaffold0002 (50-87)||(411942-411979)
[»] scaffold1221 (1 HSPs)
scaffold1221 (50-87)||(1781-1818)
[»] scaffold0376 (1 HSPs)
scaffold0376 (50-87)||(7597-7634)
[»] scaffold0015 (1 HSPs)
scaffold0015 (50-87)||(16871-16908)
[»] scaffold0598 (1 HSPs)
scaffold0598 (55-87)||(6627-6659)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 125 - 353
Target Start/End: Complemental strand, 3714924 - 3714695
Alignment:
Q  125 gataaagtgataacaagaaggacgaagatgggtttctgtatgttacatacagcggacgaaaacaccttt-ggagaacttatttcccacattcactagcag 223  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3714924 gataaagtgacaacaagaaggacgaagatgggtttctgtatgttacatacagcggacgaaaacaccttttggagaacttatttcccacattcactagcag 3714825  T
Q  224 tcataatgaatgtatactgtttgatccgatctcgttggtttgtctgataaattctttgtagtctgtactgtagtactcattcaagaaccatactctcaat 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3714824 tcataatgaatgtatactgtttgatccgatctcgttggtttgtctgataaattctttgtagtctgtactgtagtactcattcaagaaccatactctcaat 3714725  T
Q  324 gttatgtttactcttcgaactcttttacct 353  Q
    |||||||| |||||| ||||||||||||||    
T  3714724 gttatgttcactctttgaactcttttacct 3714695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 25175116 - 25175185
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  25175116 aaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaacaaaagataggg 25175185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 18433313 - 18433350
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18433313 gagggggtgcaaaatcgcacaattaacaaaagataggg 18433350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 25116060 - 25116095
Alignment:
Q  52 gggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||||||||||||||    
T  25116060 gggggtgcaaaatcgcacaattaacaaaagataggg 25116095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 41382945 - 41382912
Alignment:
Q  54 gggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||||||||||||    
T  41382945 gggtgcaaaatcgcacaattaacaaaagataggg 41382912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 18433069 - 18433035
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||| ||||||||||||    
T  18433069 ggggtgcaaaatcgcacaattagcaaaagataggg 18433035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 22428987 - 22428953
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||| ||||||||||||    
T  22428987 ggggtgcaaaatcgcacaattagcaaaagataggg 22428953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 22429196 - 22429230
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||| ||||||||||||    
T  22429196 ggggtgcaaaatcgcacaattagcaaaagataggg 22429230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 84
Target Start/End: Original strand, 23011383 - 23011413
Alignment:
Q  54 gggtgcaaaatcgcacaattaacaaaagata 84  Q
    |||||||||||||||||||||||||||||||    
T  23011383 gggtgcaaaatcgcacaattaacaaaagata 23011413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 26020504 - 26020470
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||| ||||||||||||    
T  26020504 ggggtgcaaaatcgcacaattagcaaaagataggg 26020470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 5187828 - 5187861
Alignment:
Q  51 agggggtgcaaaatcgcacaattaacaaaagata 84  Q
    |||||||||||||| |||||||||||||||||||    
T  5187828 agggggtgcaaaattgcacaattaacaaaagata 5187861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 33324835 - 33324872
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  33324835 gagggggtgcaaaatcacacaattgacaaaagataggg 33324872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 31569958 - 31569926
Alignment:
Q  55 ggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||| |||||||||||||    
T  31569958 ggtgcaaaatcgcacaattgacaaaagataggg 31569926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 1207 - 1138
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  1207 aaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaacaaaagataggg 1138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 1385 - 1454
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  1385 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 1454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 15155972 - 15155903
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  15155972 aaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaacaaaagataggg 15155903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 9465871 - 9465908
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9465871 gagggggtgcaaaatcgcacaattaacaaaagataggg 9465908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 18020085 - 18020122
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18020085 gagggggtgcaaaatcgcacaattaacaaaagataggg 18020122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 34313820 - 34313783
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34313820 gagggggtgcaaaatcgcacaattaacaaaagataggg 34313783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 37752413 - 37752450
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37752413 gagggggtgcaaaatcgcacaattaacaaaagataggg 37752450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 12281391 - 12281457
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagata 84  Q
    |||||||||||| ||||||||||         |||||||||||||||||||||||||||||||||||    
T  12281391 aaagatagggtggaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaacaaaagata 12281457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 41662164 - 41662130
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagata 84  Q
    |||||||||||||||||||||||||||||||||||    
T  41662164 gagggggtgcaaaatcgcacaattaacaaaagata 41662130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 43245960 - 43245891
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||    
T  43245960 aaagatggggtgcaaaatcgctcaataaaaaagagggggtgcaaaatcgcacaattatcaaaagataggg 43245891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 15156182 - 15156219
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||| |||||||||||||    
T  15156182 gagggggtgcaaaatcgcacaattgacaaaagataggg 15156219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 16928999 - 16928962
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16928999 gagggggtgcaaaatcgcacaattagcaaaagataggg 16928962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 16929239 - 16929276
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16929239 gagggggtgcaaaatcgcacaattagcaaaagataggg 16929276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 74981 - 75016
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagatag 85  Q
    ||||||||||||||||||||||||| ||||||||||    
T  74981 gagggggtgcaaaatcgcacaattagcaaaagatag 75016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 765823 - 765754
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  765823 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 765754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 3463694 - 3463660
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||| ||||||||||||||||||||||    
T  3463694 ggggtgcaaaattgcacaattaacaaaagataggg 3463660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 22851444 - 22851410
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||| |||||||||||||    
T  22851444 ggggtgcaaaatcgcacaattgacaaaagataggg 22851410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 23123514 - 23123548
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagata 84  Q
    ||||||||||||||||||||||||| |||||||||    
T  23123514 gagggggtgcaaaatcgcacaattagcaaaagata 23123548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 41662368 - 41662437
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  41662368 aaagatggggtgcaaaatcgctcaataaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 41662437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 9930837 - 9930870
Alignment:
Q  51 agggggtgcaaaatcgcacaattaacaaaagata 84  Q
    |||| |||||||||||||||||||||||||||||    
T  9930837 agggagtgcaaaatcgcacaattaacaaaagata 9930870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 43162290 - 43162253
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  43162290 gaggaggtgcaaaatcgcacaattaacaaaatataggg 43162253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 43162536 - 43162573
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  43162536 gagggggtgcaaaatcgcacgattgacaaaagataggg 43162573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 43246173 - 43246210
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  43246173 gagggggtgcaaaatcacacaattagcaaaagataggg 43246210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 43598756 - 43598789
Alignment:
Q  54 gggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||| ||||||||||||    
T  43598756 gggtgcaaaatcgcacaattagcaaaagataggg 43598789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 7127708 - 7127672
Alignment:
Q  51 agggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  7127708 aggggatgcaaaatcgcacaattagcaaaagataggg 7127672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 18241943 - 18241874
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  18241943 aaagatagggtgcaaaatcgctcaaaacaaaagagggggtgcaaaatcgcacaattaacaaaagataggg 18241874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 3403954 - 3404023
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||    
T  3403954 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggg 3404023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 11656747 - 11656815
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagatagg 86  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||| |||||||||||    
T  11656747 aaagatggggtgcaaaatcgctcaaaaataaagagggggtgcaaaatcgcacaattagcaaaagatagg 11656815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 12714488 - 12714451
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| |||||||||||||||||||||||||||||||    
T  12714488 gaggggctgcaaaatcgcacaattaacaaaagataggg 12714451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 33972050 - 33972013
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  33972050 gagggggtgcaaaatcgtacaattaacaaaagataggg 33972013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 30388360 - 30388396
Alignment:
Q  51 agggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30388360 agggggtgcaaaatcgcacaattagcaaaagataggg 30388396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 3403771 - 3403737
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||| ||||||||||||    
T  3403771 ggggtgcaaaatcgcacaattagcaaaagataggg 3403737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 10039729 - 10039695
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||| ||||||||||||    
T  10039729 ggggtgcaaaatcgcacaattagcaaaagataggg 10039695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 18242121 - 18242190
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  18242121 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 18242190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 21032067 - 21031998
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||| |||||| |||||    
T  21032067 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagttaggg 21031998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 31598732 - 31598762
Alignment:
Q  57 tgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||||||||||    
T  31598732 tgcaaaatcgcacaattaacaaaagataggg 31598762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 3825583 - 3825546
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  3825583 gagggggtgcaaaatcgcacaattagcaaaatataggg 3825546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 13579648 - 13579685
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  13579648 gagggggtgcaaaatcgcacaattagcaaacgataggg 13579685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 21032285 - 21032314
Alignment:
Q  58 gcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||||||||    
T  21032285 gcaaaatcgcacaattaacaaaagataggg 21032314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 13198871 - 13198940
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  13198871 aaagatagggtgcaaaatcgctcaaaacaaaagagggggtgcaaaatcgcacaattaacaaaagataggg 13198940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 3930267 - 3930198
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||         ||||||||||||||||||| |||||| |||||||||||    
T  3930267 aaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcataattaataaaagataggg 3930198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 16555572 - 16555538
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagata 84  Q
    |||||||||||||||||||||||||||||||||||    
T  16555572 gagggggtgcaaaatcgcacaattaacaaaagata 16555538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 3930477 - 3930514
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  3930477 gagggggtgcaaaatcgcacaattagcaaaagataggg 3930514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 22681631 - 22681594
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||| |||||||||||||    
T  22681631 gagggggtgcaaaatcgcacaattgacaaaagataggg 22681594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 84
Target Start/End: Complemental strand, 8488242 - 8488211
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagata 84  Q
    ||||||||||||||||||||||||||||||||    
T  8488242 ggggtgcaaaatcgcacaattaacaaaagata 8488211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 41754530 - 41754600
Alignment:
Q  139 aagaaggacgaagatgggtttctgtatgttacatacagcggacgaaaacacctttggagaacttatttccca 210  Q
    |||||||| |||||||||||||| |||||||| ||||| ||  || |||||||||||||| || ||||||||    
T  41754530 aagaaggatgaagatgggtttctttatgttacttacagtgg-ggagaacacctttggagatctgatttccca 41754600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 11241446 - 11241412
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagata 84  Q
    |||||| ||||||||||||||||||||||||||||    
T  11241446 gaggggatgcaaaatcgcacaattaacaaaagata 11241412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 39415313 - 39415244
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||| ||||||||||||||||||||| ||||||||||||    
T  39415313 aaagatggggtgcaaaatcgctcaaataaaaagagagggtgcaaaatcgcacaattagcaaaagataggg 39415244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 7603200 - 7603163
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  7603200 gagggggtgcaaaattgcacaattaaaaaaagataggg 7603163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 18077199 - 18077236
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  18077199 gagggggtgcaaaatcgcacaattagcaaaaaataggg 18077236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 24775783 - 24775816
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagatagg 86  Q
    ||||||||||||||||||||| ||||||||||||    
T  24775783 ggggtgcaaaatcgcacaattgacaaaagatagg 24775816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 27304773 - 27304736
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||| || |||||||||    
T  27304773 gagggggtgcaaaatcgcacaattagcagaagataggg 27304736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 35393773 - 35393810
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  35393773 gagggggtgcaaattcgcacaattagcaaaagataggg 35393810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 49178813 - 49178850
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  49178813 gagggggtgcaaaatcgcacaattggcaaaagataggg 49178850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 10293874 - 10293943
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  10293874 aaagatagggtgcaaaatcgctcaaaacaaaagagggggtgcaaaatcgcacaattaacaaaagataggg 10293943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 20968807 - 20968738
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  20968807 aaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaacaaaagataggg 20968738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 10293697 - 10293628
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         |||||||||||||||||||||||| |||||||||||||    
T  10293697 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattgacaaaagataggg 10293628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 47871121 - 47871156
Alignment:
Q  52 gggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||| ||||||||||||    
T  47871121 gggggtgcaaaatcgcacaattagcaaaagataggg 47871156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 18875156 - 18875225
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||| ||||||| ||||||||||||    
T  18875156 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgtacaattagcaaaagataggg 18875225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 4947312 - 4947279
Alignment:
Q  54 gggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  4947312 gggtgcaaaatcgcacaattaacaaaaaataggg 4947279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 9026789 - 9026756
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagatagg 86  Q
    |||||||||||| |||||||||||||||||||||    
T  9026789 ggggtgcaaaattgcacaattaacaaaagatagg 9026756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 14015964 - 14015997
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagatagg 86  Q
    |||||||||||||||||||||| |||||||||||    
T  14015964 ggggtgcaaaatcgcacaattagcaaaagatagg 14015997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Original strand, 17441066 - 17441095
Alignment:
Q  56 gtgcaaaatcgcacaattaacaaaagatag 85  Q
    ||||||||||||||||||||||||||||||    
T  17441066 gtgcaaaatcgcacaattaacaaaagatag 17441095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 18874935 - 18874902
Alignment:
Q  54 gggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||| ||||||||||||    
T  18874935 gggtgcaaaatcgcacaattagcaaaagataggg 18874902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 17372354 - 17372318
Alignment:
Q  51 agggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  17372354 agggggtgcaaaatcgcacaattagcaaaaaataggg 17372318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 17518391 - 17518325
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagata 84  Q
    |||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  17518391 aaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaacaaaagata 17518325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 47955573 - 47955642
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||    
T  47955573 aaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaataaaagataggg 47955642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 8108777 - 8108741
Alignment:
Q  51 agggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||||||||||||||||    
T  8108777 agggggtgcaaaatcgcacaattaacaaaagataggg 8108741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 13589656 - 13589693
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  13589656 gagggggtgcaaaatcgcacaattagcaaaagataggg 13589693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 31848189 - 31848226
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  31848189 gagggggtgcaaaatcgtacaattaacaaaagataggg 31848226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 41083208 - 41083245
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||| |||||||||||||||    
T  41083208 gagggggtgcaaaatcgcacaactaacaaaagataggg 41083245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 47955395 - 47955326
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  47955395 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 47955326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 1176893 - 1176856
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  1176893 gagggggtgcaaaattgcacaattgacaaaagataggg 1176856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 17518599 - 17518636
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  17518599 gagggggtgcaaaatcgcacaattggcaaaagataggg 17518636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 22149701 - 22149733
Alignment:
Q  55 ggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||| ||||||||||||    
T  22149701 ggtgcaaaatcgcacaattagcaaaagataggg 22149733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 45625 - 45556
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||         ||||| ||||||||||||||||||||||||||||||||    
T  45625 aaagatagggtgcaaaatcgctcaaaaaaaaagagggagtgcaaaatcgcacaattaacaaaagataggg 45556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 45772 - 45841
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  45772 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 45841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 30191190 - 30191259
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||    
T  30191190 aaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaataaaagataggg 30191259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 40469516 - 40469448
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagatagg 86  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||| |||||||||||    
T  40469516 aaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagatagg 40469448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 15920835 - 15920799
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagatagg 86  Q
    |||||||||||||||||||||||||||||||||||||    
T  15920835 gagggggtgcaaaatcgcacaattaacaaaagatagg 15920799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 32672931 - 32672865
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagata 84  Q
    |||||||||||||||||||||||         ||| |||||||||||||||||||||||||||||||    
T  32672931 aaagatagggtgcaaaatcgctcaaaaaaaaagagagggtgcaaaatcgcacaattaacaaaagata 32672865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 40469694 - 40469763
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||    
T  40469694 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggg 40469763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 11883680 - 11883643
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11883680 gagggggtgcaaaatcgcacaattagcaaaagataggg 11883643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 11883923 - 11883960
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11883923 gagggggtgcaaaatcgcacaattagcaaaagataggg 11883960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 6171207 - 6171175
Alignment:
Q  55 ggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||||||||||||    
T  6171207 ggtgcaaaatcgcacaattaacaaaagataggg 6171175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 20347217 - 20347185
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagatag 85  Q
    |||||||||||||||||||||||||||||||||    
T  20347217 ggggtgcaaaatcgcacaattaacaaaagatag 20347185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 26737537 - 26737501
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagatagg 86  Q
    ||||||||||||||||||||||||| |||||||||||    
T  26737537 gagggggtgcaaaatcgcacaattagcaaaagatagg 26737501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 24832385 - 24832351
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||| ||||||||||||    
T  24832385 ggggtgcaaaatcgcacaattagcaaaagataggg 24832351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 30191012 - 30190943
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  30191012 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 30190943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 7591850 - 7591883
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagatagg 86  Q
    ||||||||||||||||||||| ||||||||||||    
T  7591850 ggggtgcaaaatcgcacaattgacaaaagatagg 7591883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 20347461 - 20347498
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  20347461 gagggggtgcaaaatcgcacaattggcaaaagataggg 20347498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 6495723 - 6495755
Alignment:
Q  55 ggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||| |||||||||||||    
T  6495723 ggtgcaaaatcgcacaattcacaaaagataggg 6495755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 15321446 - 15321410
Alignment:
Q  51 agggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  15321446 aggggatgcaaaattgcacaattaacaaaagataggg 15321410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 32673141 - 32673177
Alignment:
Q  51 agggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||  ||||||||||||    
T  32673141 agggggtgcaaaatcgcacaattggcaaaagataggg 32673177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 3687411 - 3687374
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3687411 gagggggtgcaaaatcgcacaattaacaaaagataggg 3687374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 9412112 - 9412046
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagata 84  Q
    |||||||||||| ||||||||||         |||||||||||||||||||||||||||||||||||    
T  9412112 aaagatagggtggaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaacaaaagata 9412046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 5349733 - 5349767
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||||||||||||||    
T  5349733 ggggtgcaaaatcgcacaattaacaaaagataggg 5349767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 8953886 - 8953923
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  8953886 gagggggtgcaaaattgcacaattaacaaaagataggg 8953923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 84
Target Start/End: Original strand, 35080223 - 35080254
Alignment:
Q  53 ggggtgcaaaatcgcacaattaacaaaagata 84  Q
    ||||||||||||||||||||||||||||||||    
T  35080223 ggggtgcaaaatcgcacaattaacaaaagata 35080254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 81
Target Start/End: Complemental strand, 5349519 - 5349489
Alignment:
Q  51 agggggtgcaaaatcgcacaattaacaaaag 81  Q
    |||||||||||||||||||||||||||||||    
T  5349519 agggggtgcaaaatcgcacaattaacaaaag 5349489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 9412290 - 9412359
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  9412290 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 9412359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 3687653 - 3687690
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  3687653 gagggggtgcaaaatcgcacaattggcaaaagataggg 3687690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 6908265 - 6908232
Alignment:
Q  54 gggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||| ||||||||    
T  6908265 gggtgcaaaatcgcacaattaacaatagataggg 6908232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 13772898 - 13772935
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  13772898 gagggggtgcaaaatcgcacaattagcaaatgataggg 13772935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 29291863 - 29291826
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  29291863 gagggggtgcaaaatcgcataattatcaaaagataggg 29291826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 34235977 - 34236010
Alignment:
Q  52 gggggtgcaaaatcgcacaattaacaaaagatag 85  Q
    ||||||||||||||||||||||| ||||||||||    
T  34235977 gggggtgcaaaatcgcacaattagcaaaagatag 34236010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 38191566 - 38191599
Alignment:
Q  54 gggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||| ||||||||||||||||||    
T  38191566 gggtgcaaaatcgcataattaacaaaagataggg 38191599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 439020 - 438950
Alignment:
Q  17 caaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||| ||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||    
T  439020 caaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggg 438950  T

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Target: scaffold0319 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 6662 - 6731
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||    
T  6662 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggg 6731  T

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Target: scaffold0319; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 6451 - 6414
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  6451 gagggggtgcaaaatcgcacaattagcaaaagataggg 6414  T

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Target: scaffold0192 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 25334 - 25403
Alignment:
Q  18 aaagatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||| ||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||    
T  25334 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggg 25403  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 205743 - 205706
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  205743 gagggggtgcaaaatcgcacaattagcaaaagataggg 205706  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 411979 - 411942
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||||||||||||||||||| |||||||||||||    
T  411979 gagggggtgcaaaatcgcacaattgacaaaagataggg 411942  T

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Target: scaffold1221 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1221
Description:

Target: scaffold1221; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 1781 - 1818
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  1781 gaggaggtgcaaaatcgcacaataaacaaaagataggg 1818  T

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Target: scaffold0376 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 7597 - 7634
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  7597 gagggggtacaaaatcgcacaattagcaaaagataggg 7634  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 16908 - 16871
Alignment:
Q  50 gagggggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  16908 gagggggtgcataatcgcacaattagcaaaagataggg 16871  T

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Target: scaffold0598 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 6659 - 6627
Alignment:
Q  55 ggtgcaaaatcgcacaattaacaaaagataggg 87  Q
    ||||||||||| |||||||||||||||||||||    
T  6659 ggtgcaaaatcacacaattaacaaaagataggg 6627  T

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