View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18911_high_2 (Length: 715)
Name: NF18911_high_2
Description: NF18911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18911_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 639; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 19 - 701
Target Start/End: Original strand, 33755507 - 33756188
Alignment:
| Q |
19 |
acttaaataattttatttcagcccaaatagaaaatagagtctctgtgatctactctagctagttgagtttattgaagaccctacagttcttccgaacttc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33755507 |
acttaaataattttatttcagcccaaatagaaaatagagtctctgtgatctactctagctaattgagtttattgaagaccctacagttcttccgaacttc |
33755606 |
T |
|
| Q |
119 |
tccttcatttccaatcaaaagaccaatttttcccatctttatcatagcagttgcaaaattattaacaaacttctcgccatttgaagcaaaattagacaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33755607 |
tccttcatttccaatcaaaagaccaatttttcccatctttatcatagcagttgcaaaattattaacaaacttctcgccatttgaagcaaaattagacaca |
33755706 |
T |
|
| Q |
219 |
aaaggacttgttgattttatccaaagtaagtttttgatcgatctgcaatatacaatatacatttcttaagaagaatttgtaaaataaaagaagtattcta |
318 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33755707 |
aaaagacttgttgattt-atccaaagtaagtttttgatcgatctgcaatatacaatatacatttcttaagaagaatttgtaaaataaaagaagtattcta |
33755805 |
T |
|
| Q |
319 |
atccaaaaatgcagcaccattacctgattcaaacatattcacaagcttagtcggaacattgtattttggtcctccggataaggccagaacatctgttcta |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33755806 |
atccaaaaatgcagcaccattacctgattcaaacaaattcacaagcttagtcggaacattgtattttggtcctccggataaggccagaacatctgttcta |
33755905 |
T |
|
| Q |
419 |
gccagtgttatgatgtctgcacatgatactgttaaagtacaaataacttctattgtttccttccgctcgtccattggatcatagcctctaacagtttcgt |
518 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33755906 |
gccagtgttataatgtctgcacatgatactgttaaaggacaaataacttctattgtttccttccgctcgtccattggatcatagcctctaacagtttcgt |
33756005 |
T |
|
| Q |
519 |
ttgagtcattttctttctctgaattagtcctatttgttgagtctatatggatagatgcatcacagcctctacacattgatggaaatgtatgtcatcgata |
618 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33756006 |
ttgcgtcattttctttctctgaattagtcctattttttgagtctatgtggatagatgcatcacagcctctacacattgatggaaatgtatgtcatcgata |
33756105 |
T |
|
| Q |
619 |
caaataaacttttgaataaaaactatcgaaaaattaattcaaaacaattttttaatagatcctaatcttcttatgcctctgtg |
701 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33756106 |
caaataaacttttgaataaaaactatcgaaaaattaaatcaaaacaattttttaatagatcctaatcttcttatgcctctgtg |
33756188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 40 - 696
Target Start/End: Original strand, 33761489 - 33762157
Alignment:
| Q |
40 |
cccaaatagaaaatagagtctctgtgatctactctagctagttgagttt-attgaagaccctacagt--tcttccgaacttctccttcatttccaatcaa |
136 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| |||| ||| ||||||||||||||| | ||||||||| ||||||||||||||| | ||| |
|
|
| T |
33761489 |
cccaaatagaaaatagagtctcttcaatccactctagctaattgaattttattgaagaccctacaatattcttccgaatttctccttcatttcctaacaa |
33761588 |
T |
|
| Q |
137 |
aagaccaatttttc-ccatctttatcatagcagttgcaaaattattaacaaacttctcgccatttgaagcaaaattagacacaaaaggacttgttgattt |
235 |
Q |
| |
|
|| ||| ||||| |||||||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33761589 |
aaatccattttttttccatctttatcatagcagttgcaaaactcttaacaaacttatcaccatttgaagcaaaattagacacaaaaggacttgttgattt |
33761688 |
T |
|
| Q |
236 |
tatccaaagtaagtttttgatcgatctgcaatatacaatatacatttcttaagaagaatttgt------------------aaaataaaagaagtattct |
317 |
Q |
| |
|
| ||||||||||||| ||||||||||| |||||||| | |||| ||||||| |||| | |||||||||||| |||| |
|
|
| T |
33761689 |
aa-ccaaagtaagtttctgatcgatctg-------caatatacctctcttgagaagaaattgttggtaaaattcattatcaagaataaaagaagtcttct |
33761780 |
T |
|
| Q |
318 |
aatccaaaaatgcagcaccattacctgattcaaacatattcacaagcttagtcggaacattgtattttggtcctccggataaggccagaacatctgttct |
417 |
Q |
| |
|
||| ||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
33761781 |
aatacaaaattgcagcatcattgcctgattcaaacaatttcacaagcttagtcggaacattgtattttggtcctccggataaggccaaaacatctcttct |
33761880 |
T |
|
| Q |
418 |
agccagtgttatgatgtctgcacatgatactgttaaagtacaaataacttctattgtttccttccgctcgtccattggatcatagcctctaacagtttcg |
517 |
Q |
| |
|
|| ||||||| ||||||||||||||||| |||| ||| |||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
33761881 |
agaaagtgttaagatgtctgcacatgatattgttgaaggacaaataacttcgattgtttccttcggctcgtctattagatcatagcctctaacagtttcg |
33761980 |
T |
|
| Q |
518 |
tttgagtcattttctttctctgaattagtcctatttgttgagtctatatggatagatgcatcacagcctctacacattgatggaaatgtatgtcatcgat |
617 |
Q |
| |
|
|||| |||||||| ||||||||| || || |||||||||||| |||| | | |||||||||||| || |||||||||||||||||||||||| |||||| |
|
|
| T |
33761981 |
tttgcgtcattttatttctctgatttcgtgctatttgttgag-ctatgagaagagatgcatcacaacccctacacattgatggaaatgtatgttatcgat |
33762079 |
T |
|
| Q |
618 |
acaaataaacttttgaataaaaactatcgaaaaattaattcaaaacaattttttaatagatcctaatcttcttatgcct |
696 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33762080 |
acaaataaacttttgaataaaaactatcg-aaaattaaatcaaaacaattttttaatagatcccaatcttcttatgcct |
33762157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 43 - 250
Target Start/End: Complemental strand, 33755505 - 33755299
Alignment:
| Q |
43 |
aaatagaaaatagagtctctgtgatctactctagctagttgagtttattgaagaccctacagttcttccgaacttctccttcatttccaatcaaaagacc |
142 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||||||||||||||||||| |||| |||| ||||||| || |||||||||||||||| ||||| || |
|
|
| T |
33755505 |
aaatagaaaatagagtctttgcaatccactctagctagttgagtttattgacgaccttacaattcttcctaatttctccttcatttccacccaaaactcc |
33755406 |
T |
|
| Q |
143 |
aatttttcccatctttatcatagcagttgcaaaattattaacaaacttctcgccatttgaagcaaaattagacacaaaaggacttgttgattttatccaa |
242 |
Q |
| |
|
|||||| | ||||||||||||||| ||||||||| ||||||||||| || |||||||||| |||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
33755405 |
aattttccacatctttatcatagcggttgcaaaacacttaacaaacttatcaccatttgaagtaaaattagacacaaaatgacttgttga-tttatccaa |
33755307 |
T |
|
| Q |
243 |
agtaagtt |
250 |
Q |
| |
|
|| ||||| |
|
|
| T |
33755306 |
agcaagtt |
33755299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 71 - 271
Target Start/End: Original strand, 33763576 - 33763775
Alignment:
| Q |
71 |
ctctagctagttgagtttattgaagaccctacagttcttccgaacttctccttcatttccaatcaaaagaccaatttttcccatctttatcatagcagtt |
170 |
Q |
| |
|
||||||||| ||| |||| ||||| ||||| || ||||| || | ||||||||||||||||| ||||| |||| ||| ||||||||||||||||| ||| |
|
|
| T |
33763576 |
ctctagctaattgcgtttgttgaaaaccctgcaattcttgcggatttctccttcatttccaaccaaaactccaactttccccatctttatcatagcggtt |
33763675 |
T |
|
| Q |
171 |
gcaaaattattaacaaacttctcgccatttgaagcaaaattagacacaaaaggacttgttgattttatccaaagtaagtttttgatcgatctgcaatata |
270 |
Q |
| |
|
|| ||| | ||||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||| ||||||| |||| |
|
|
| T |
33763676 |
gcgaaactcttaacaaacttatcaccatttgaagcaaaattagacacaaaagtacttgttga-tttatccaaagcaagttgctgatcaatctgcattata |
33763774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 444
Target Start/End: Original strand, 33764120 - 33764193
Alignment:
| Q |
371 |
ggaacattgtattttggtcctccggataaggccagaacatctgttctagccagtgttatgatgtctgcacatga |
444 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| | ||||| || |||| |||| || ||||||||||||||| |
|
|
| T |
33764120 |
ggaatattgtattttggtcctccagataaggccacagcatctcttgtagcaagtgctacgatgtctgcacatga |
33764193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 338
Target Start/End: Original strand, 33763818 - 33763853
Alignment:
| Q |
303 |
taaaagaagtattctaatccaaaaatgcagcaccat |
338 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33763818 |
taaaagaagtattctgatccaaaaatgcagcaccat |
33763853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University