View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18911_high_3 (Length: 532)

Name: NF18911_high_3
Description: NF18911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18911_high_3
NF18911_high_3
[»] chr2 (5 HSPs)
chr2 (20-517)||(40856848-40857344)
chr2 (239-513)||(18744371-18744644)
chr2 (349-513)||(9684877-9685041)
chr2 (339-471)||(17345161-17345292)
chr2 (363-447)||(8588632-8588716)
[»] chr5 (3 HSPs)
chr5 (236-522)||(15291373-15291658)
chr5 (170-262)||(26008570-26008660)
chr5 (363-522)||(27337165-27337324)
[»] chr8 (3 HSPs)
chr8 (239-446)||(37517636-37517843)
chr8 (214-289)||(4700344-4700419)
chr8 (276-424)||(40840123-40840270)
[»] chr4 (1 HSPs)
chr4 (238-449)||(53171042-53171253)
[»] chr1 (3 HSPs)
chr1 (239-454)||(28040481-28040695)
chr1 (216-289)||(7435050-7435123)
chr1 (339-513)||(19035908-19036081)
[»] chr6 (3 HSPs)
chr6 (453-513)||(26225238-26225298)
chr6 (363-449)||(7200049-7200136)
chr6 (363-471)||(29337562-29337670)
[»] chr7 (1 HSPs)
chr7 (363-468)||(47679647-47679752)
[»] chr3 (2 HSPs)
chr3 (239-329)||(29862465-29862555)
chr3 (363-471)||(49018475-49018583)


Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 20 - 517
Target Start/End: Complemental strand, 40857344 - 40856848
Alignment:
Q  20 gttgaatatattgtgattggtagaggtccttttttcgatgaccttcaatgaaggatggcttcgatctatttattagagttgggatttggtttgtactcgg 119  Q
    |||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40857344 gttgaatatattgtgattggtagaggtcctttctttgaggaccttcaatgcaggatggcttcgatctgtttattagagttgggatttggtttgtactcgg 40857245  T
Q  120 cggtataacaggtttcctcatgcacttctatggcttccaagatggaatattgggtgctacaagatcatatataccgagagagaatgcgataagagtatgg 219  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40857244 cggtataacaggtttcctcgtacacttctatggcttccaagatggaatattgggtgctacaagatcatatataccgagagagaatgcgataagtgtatgg 40857145  T
Q  220 actcttattttgactgtgttttggatggtcttcgtggcacaattttagattttaattttagcagttttacaaacaagaacatcatccctactaaagtcca 319  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  40857144 actctcattttgactgtgttttggatggtcttcgtggtacaattttagattttaattttaacagttttacaaacaagaatatcatccctactaaagtcca 40857045  T
Q  320 acttgttttgacacatgtcctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgca 419  Q
    |||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40857044 acttgttttgacacatgtcctttttagt-aaaagtgtttaggatatgaaagtaaagtttaacatgaccaccagacagaaaatcgtttttgcgtgtttgca 40856946  T
Q  420 agcagacatgttcatgattttcttctagctgtcccttattgatgagttaggttaaaaaatgccacaagtacaataccgtactatccttagatattgtc 517  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40856945 agcagacatgctcatgattttcttctagctatcccctattgatgagttaggttgaaaaatgccacaagtacaataccgtactatccttagatattgtc 40856848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 513
Target Start/End: Original strand, 18744371 - 18744644
Alignment:
Q  239 tttggatggtcttcgtggcacaattttagattttaattttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttgacacatgtc 338  Q
    |||||||||||||||||| ||||||  ||||||| || ||||||||||||| | |||  ||| | || || ||||||  |||| ||||||| |   ||      
T  18744371 tttggatggtcttcgtggtacaattccagattttgatgttagcagttttactagcaaagacaccgtctctcctaaagcacaacatgttttggcgagtgct 18744470  T
Q  339 ctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagca-gacatgttcatgat 437  Q
    ||||||||| ||||||||| ||  |||| |||| |||||| | |||||||| ||||||||   | ||||||  ||||||||||||  | ||| ||| ||     
T  18744471 ctttttagt-aaaagtgttcaggatatggaagttaagtttgagatgaccacgagacagaaggcaatttttggatgtttgcaagcaccaaatgctcaagaa 18744569  T
Q  438 tttcttctagctgtcccttattgatgagttaggttaaaaaatgccacaagtacaataccgtactatccttagatat 513  Q
    |||||||||||| ||||  ||||||| |||||||||  | ||| ||| |||  | || ||||||||||||||||||    
T  18744570 tttcttctagctatccc-gattgatgggttaggttagcatatgtcaccagtggagtatcgtactatccttagatat 18744644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 513
Target Start/End: Original strand, 9684877 - 9685041
Alignment:
Q  349 aaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgattttcttctag 447  Q
    ||||||||| ||  |||| |||| |||||| |||||||||| ||||||||   | ||||||  ||||||||||||| ||||  ||| |||||||||||||    
T  9684877 aaaagtgttcaggatatggaagttaagtttgacatgaccacgagacagaaggcaatttttggatgtttgcaagcagcacatactcaagattttcttctag 9684976  T
Q  448 ctgtcccttattgatgagttaggttaaaaaatgccacaagtacaataccgtactatccttagatat 513  Q
    || |||| |||||||| ||||||| |  | ||| ||| |||  | || ||||||||||||||||||    
T  9684977 ctatccc-tattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatccttagatat 9685041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 471
Target Start/End: Complemental strand, 17345292 - 17345161
Alignment:
Q  339 ctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagca-gacatgttcatgat 437  Q
    ||||||||||||| ||||| ||  |||| |||| |||||| |||||||||||||||| || | | ||||||  |||||||||| |  ||||| ||| |||    
T  17345292 ctttttagtaaaa-gtgttcagcatatggaagttaagtttgacatgaccaccagacaaaagacaatttttggatgtttgcaagaaccacatgctcaagat 17345194  T
Q  438 tttcttctagctgtcccttattgatgagttaggt 471  Q
    |||||||||||| ||||  ||||||| |||||||    
T  17345193 tttcttctagctatccc-aattgatgggttaggt 17345161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 447
Target Start/End: Complemental strand, 8588716 - 8588632
Alignment:
Q  363 tatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcagacatgttcatgattttcttctag 447  Q
    |||| |||| |||||| |||||||||| | ||| || |||||||| | || |||||||||   |||| |||||||||||||||||    
T  8588716 tatggaagtcaagtttgacatgaccactaaacataagatagttttagagtttttgcaagcgtccatgctcatgattttcttctag 8588632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 522
Target Start/End: Original strand, 15291373 - 15291658
Alignment:
Q  236 tgttttggatggtcttcgtggcacaattttagattttaattttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttgacacat 335  Q
    ||||||||||||||||||||| ||||||||||||||| |  ||||||||||||| | |||  ||| | ||||| ||||||   ||| |||||||||   |    
T  15291373 tgttttggatggtcttcgtggtacaattttagattttgacgttagcagttttactagcaaagacaccgtccctcctaaagcggaacatgttttgacgagt 15291472  T
Q  336 gtcctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcat 434  Q
    |  ||||||||| ||||||||| |   |||| |||| |||||| |||||||||| ||||||||   | |||| |  ||||||||||||| ||||| ||      
T  15291473 gctctttttagt-aaaagtgttcaagatatggaagttaagtttgacatgaccacgagacagaaggcaattttgggatgtttgcaagcagcacatgctcgg 15291571  T
Q  435 gattttcttctagctgtcccttattgatgagttaggttaaaaaatgccacaagtacaataccgtactatccttagatattgtcctatg 522  Q
    ||||||||||||||| ||||  ||||||| ||||||| |  | ||| ||| |||  | || |||||||||||||||||| ||| ||||    
T  15291572 gattttcttctagctatccc-aattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatccttagatatcgtcgtatg 15291658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 26008570 - 26008660
Alignment:
Q  170 tgggtgctacaagatcatatataccgagagagaatgcgataagagtatggactcttattttgactgtgttttggatggtcttcgtggcacaat 262  Q
    |||||||||||||| |||||||    ||||| ||||||||||| ||||||||||| |||||| | ||| ||| |||||||||| ||| |||||    
T  26008570 tgggtgctacaagaacatatatta--agagacaatgcgataagtgtatggactctgattttggcagtgctttagatggtcttcttggtacaat 26008660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 522
Target Start/End: Complemental strand, 27337324 - 27337165
Alignment:
Q  363 tatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgattttcttctagctgtcccttattga 461  Q
    |||| |||| |||||| |||||||||| ||||||||   |||||| |  ||||||||| ||  ||||| ||| ||||||||| ||||| ||||  |||||    
T  27337324 tatggaagttaagtttgacatgaccactagacagaaggcagttttgggatgtttgcaaccaccacatgctcaagattttcttttagctatccca-attga 27337226  T
Q  462 tgagttaggttaaaaaatgccacaagtacaataccgtactatccttagatattgtcctatg 522  Q
    || |||||||||  | ||| ||| |||  | ||||||||||||||| ||||| ||| ||||    
T  27337225 tgggttaggttagcatatgtcaccagttgagtaccgtactatccttcgatatcgtcttatg 27337165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 239 - 446
Target Start/End: Complemental strand, 37517843 - 37517636
Alignment:
Q  239 tttggatggtcttcgtggcacaattttagattttaattttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttgacacatgtc 338  Q
    |||||||||||||||||| || |||| | ||||| || ||||||||||||| | |||  ||| | ||||| ||||||  | || ||||||| |   |||     
T  37517843 tttggatggtcttcgtggtacgatttaaaattttgatgttagcagttttactagcaatgacaccgtccctcctaaagcacgacatgttttggcgagtgtt 37517744  T
Q  339 ctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgat 437  Q
    |||||||| ||||||| || |   ||||||||| |||||| |||||||||| ||| |||| ||| ||||||  ||||||||||||| ||||| |||||||    
T  37517743 ctttttag-aaaaagttttcatgatatgaaagttaagtttgacatgaccacgagatagaagataatttttggatgtttgcaagcagcacatgctcatgat 37517645  T
Q  438 tttcttcta 446  Q
    |||||||||    
T  37517644 tttcttcta 37517636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 289
Target Start/End: Complemental strand, 4700419 - 4700344
Alignment:
Q  214 gtatggactcttattttgactgtgttttggatggtcttcgtggcacaattttagattttaattttagcagttttac 289  Q
    ||||| ||||| ||||||||  || |||||||||||||||||| || ||| |||||||| | | ||||||||||||    
T  4700419 gtatgaactctgattttgacaatgctttggatggtcttcgtggtacgattctagattttgactgtagcagttttac 4700344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 424
Target Start/End: Complemental strand, 40840270 - 40840123
Alignment:
Q  276 tttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttgacacatgtcctttttagtaaaaagtgtttagattatgaaagtaaag 375  Q
    ||||||| |||||| | |||| ||| | |||||  ||||| | ||| |||||||||   |||| |||||||||||| ||||| ||  |||| || ||||     
T  40840270 tttagcaattttactagcaaggacaccgtccctcttaaagccgaacatgttttgacgagtgtcatttttagtaaaa-gtgttcaggatatggaactaaaa 40840172  T
Q  376 tttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag 424  Q
    ||||| ||| |||| ||||| |||| | |||||| ||||||||||||||    
T  40840171 tttaatatgcccacaagacacaaaacaatttttgggtgtttgcaagcag 40840123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 449
Target Start/End: Complemental strand, 53171253 - 53171042
Alignment:
Q  238 ttttggatggtcttcgtggcacaattttagattttaattttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttgacacatgt 337  Q
    |||||||| ||||||||||  | |||| ||||||| || |||| |||||||| | |||  ||||| ||||| ||||||  |||| ||||||| |   ||     
T  53171253 ttttggattgtcttcgtggtgcgatttcagattttgatgttagtagttttactagcaaagacatcgtccctcctaaagcacaacatgttttggcgagtgc 53171154  T
Q  338 cctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatga 436  Q
     ||||||||||||| ||||| | | |||| |||| |||||| |||| ||||| ||| |||||| | ||||||  ||||||||||||| ||||| ||| ||    
T  53171153 tctttttagtaaaa-gtgttcaaaatatggaagttaagtttgacataaccacgagaaagaaaacaatttttggatgtttgcaagcagcacatgctcagga 53171055  T
Q  437 ttttcttctagct 449  Q
    |||||||||||||    
T  53171054 ttttcttctagct 53171042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 454
Target Start/End: Original strand, 28040481 - 28040695
Alignment:
Q  239 tttggatggtcttcgtggcacaattttagattttaattttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttgacacatgtc 338  Q
    |||||||||||||||||| || ||| |||||||| || ||||||||||||| | |||  ||| ||||||| ||||||  |||| ||||||  |   ||      
T  28040481 tttggatggtcttcgtggtacgattctagattttgatgttagcagttttactagcaatgacaccatccctcctaaagcacaacatgtttttgcgagtgct 28040580  T
Q  339 ctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgat 437  Q
    |||||||||||||| || | ||  |||| || | |||||| |||||||||| ||||||||   | ||||||  ||||||||||||| ||||| ||| |||    
T  28040581 ctttttagtaaaaa-tg-tcaggatatggaaattaagtttgacatgaccacgagacagaaggcaatttttggatgtttgcaagcagaacatgctcaagat 28040678  T
Q  438 tttcttctagctgtccc 454  Q
    |||||||||||| ||||    
T  28040679 tttcttctagctatccc 28040695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 7435123 - 7435050
Alignment:
Q  216 atggactcttattttgactgtgttttggatggtcttcgtggcacaattttagattttaattttagcagttttac 289  Q
    ||||||||| ||||||||  ||||||||||||||||||| | || ||| |||||||| | ||||| ||||||||    
T  7435123 atggactctgattttgacgatgttttggatggtcttcgtagtaccattctagattttgactttagtagttttac 7435050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 513
Target Start/End: Complemental strand, 19036081 - 19035908
Alignment:
Q  339 ctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgat 437  Q
    ||||||||||||| ||||| ||  |||| |||| |||||| |||||||||| ||||| ||   | ||||||  ||| ||||||||| ||||| ||  |||    
T  19036081 ctttttagtaaaa-gtgttcaggatatggaagttaagtttgacatgaccacgagacaaaaggcaatttttggatgtctgcaagcagcacatgctcgggat 19035983  T
Q  438 tttcttctagctgtcccttattgatgagttaggttaaaaaatgccacaagtacaataccgtactatccttagatat 513  Q
    |||||||||||| ||||  ||||||||||||||| || | ||| ||| |||  | || | ||||||||||||||||    
T  19035982 tttcttctagctatcccg-attgatgagttaggtcaacatatgtcaccagtggagtatcatactatccttagatat 19035908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 453 - 513
Target Start/End: Original strand, 26225238 - 26225298
Alignment:
Q  453 ccttattgatgagttaggttaaaaaatgccacaagtacaataccgtactatccttagatat 513  Q
    ||||||||||||||||||| || | ||| |||||||| | |||||||||||||||||||||    
T  26225238 ccttattgatgagttaggtcaacatatgtcacaagtagagtaccgtactatccttagatat 26225298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 449
Target Start/End: Original strand, 7200049 - 7200136
Alignment:
Q  363 tatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcaga-catgttcatgattttcttctagct 449  Q
    |||| |||| |||||| | |||||||| ||||||||| ||||| ||| ||||| ||||| ||| |||| ||| |||||||||||||||    
T  7200049 tatggaagtgaagtttgatatgaccacaagacagaaagtagttcttgggtgttggcaagaagaacatgctcaggattttcttctagct 7200136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 471
Target Start/End: Original strand, 29337562 - 29337670
Alignment:
Q  363 tatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgattttcttctagctgtcccttattga 461  Q
    |||| |||| |||||| |||||||| | ||||||||    ||||| | |||||||||||||| ||||| ||| ||||||||||||||| | ||| |||||    
T  29337562 tatggaagttaagtttgacatgacctctagacagaaggccgttttggggtgtttgcaagcagcacatgctcaggattttcttctagctat-cctgattga 29337660  T
Q  462 tgagttaggt 471  Q
    || |||||||    
T  29337661 tgggttaggt 29337670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 468
Target Start/End: Complemental strand, 47679752 - 47679647
Alignment:
Q  363 tatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgattttcttctagctgtcccttattga 461  Q
    |||| |||| |||||| |||||||||| |||||||| | |||||| |  |||||||||| || ||||| ||| ||||||||||||||| | ||| |||||    
T  47679752 tatggaagttaagtttgacatgaccactagacagaagacagttttaggatgtttgcaagtagcacatgctcaggattttcttctagctat-cctgattga 47679654  T
Q  462 tgagtta 468  Q
    |||||||    
T  47679653 tgagtta 47679647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 329
Target Start/End: Complemental strand, 29862555 - 29862465
Alignment:
Q  239 tttggatggtcttcgtggcacaattttagattttaattttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttg 329  Q
    |||||||||||||||||| || ||| ||||||||    |||| |||||||| |||||| ||||| ||||| ||||||  |||| |||||||    
T  29862555 tttggatggtcttcgtggtacgattctagattttggcattagtagttttactaacaaggacatcgtccctcctaaagcacaacatgttttg 29862465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 471
Target Start/End: Complemental strand, 49018583 - 49018475
Alignment:
Q  363 tatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgattttcttctagctgtcccttattga 461  Q
    |||| |||| |||||| || ||||||| ||||| || | | |||| |  ||||||||||||| ||||| ||||||||||||||||||| | ||| |||||    
T  49018583 tatgtaagttaagtttgacgtgaccacgagacaaaagacaattttaggatgtttgcaagcagtacatgctcatgattttcttctagctat-cctgattga 49018485  T
Q  462 tgagttaggt 471  Q
    || |||||||    
T  49018484 tgggttaggt 49018475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University