View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18911_high_5 (Length: 397)

Name: NF18911_high_5
Description: NF18911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18911_high_5
NF18911_high_5
[»] chr2 (1 HSPs)
chr2 (1-301)||(306264-306557)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 306557 - 306264
Alignment:
Q  1 acacaccaatcggatatatagtccacaagaccacaaatagaaattatcaatttttatgagaaacttgctctttagacacccttcgtttgctcccaggcac 100  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  306557 acacaccaatcggatatatagtccacaa--------atagaaattatcaatttttatgagaaacttgctctttagacacccttcgtttgctcccaggcac 306466  T
Q  101 tcaaaatacctccaacaacattaactattgtttgctggtcaatggtagttacctaccgtttcaaacatgtcatatatagaaacccaaacacattcctagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  306465 tcaaaatacctccaacaacattaactattgtttgctggtcaatggtagttacctaccgtttcaaacatgtcatatatagaaacccaaacacattcctagt 306366  T
Q  201 tcttatatatgagaggtttgaaacga-ggaatatatatttttatattacacagaaagaaaataaatgctaacaaattttctttatgcacttgtttagaag 299  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||  |||||||||||||||||||||    
T  306365 tcttatatatgacaggtttgaaacgagggaatatatatttttatattacacggaaagaaaagaaatgctaacaaattccctttatgcacttgtttagaag 306266  T

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