View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18911_low_1 (Length: 726)
Name: NF18911_low_1
Description: NF18911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18911_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 187 - 719
Target Start/End: Complemental strand, 13795272 - 13794740
Alignment:
| Q |
187 |
aattaaaatatgagaattagtttcactgtagaaagaagatcgtgcatcatctatacatgcactatgagctgcatcaatcatgatataatactcgagtaaa |
286 |
Q |
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| T |
13795272 |
aattaaaatatgagaattagtttcactgtagaaagaagatcgtgcatcagctatacatgcactatgagctgcatcaatcatgatataatactcgagtaaa |
13795173 |
T |
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| Q |
287 |
ttcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaaacaagatgctg |
386 |
Q |
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| T |
13795172 |
ttcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaaacaagatgctg |
13795073 |
T |
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| Q |
387 |
gagagatctttcatttcttactgactcatgataactcatcatgcttgaatgcaataatacccgatatttttacgcacagtgtgatctgaatcaatgggat |
486 |
Q |
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| T |
13795072 |
gagagatctttcatttcttactgactcatgataactcgtcatgcttgaatgcgataatacccgatatttttacgcacagtgtgatctgaatcaatgggat |
13794973 |
T |
|
| Q |
487 |
caacgagtttatttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataatatttagtaaaca |
586 |
Q |
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| T |
13794972 |
caacgagtttacttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataataattagtaaaca |
13794873 |
T |
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| Q |
587 |
aaacatatttacatttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctctc |
686 |
Q |
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| T |
13794872 |
aaacatatttacatttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctctc |
13794773 |
T |
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| Q |
687 |
aatcttgttttattttcaaaattacctttgcta |
719 |
Q |
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| T |
13794772 |
aatcttgttttattttcaaaattacctttgcta |
13794740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 13795853 - 13795677
Alignment:
| Q |
19 |
aagacggtttttcattgaatatgagttatttgaaatcaatcattctcatcaatgttatcaattatggatcatgagcaattgcaatttgttcaaatcccac |
118 |
Q |
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| T |
13795853 |
aagacggtttttcattgaatatgagttatttgaaatcaatcattctcatcaatgttatcaattatggatcatgagcaattgcaatttgttcaaatcccac |
13795754 |
T |
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| Q |
119 |
tgcacgatgatgttgtagtgcgcgatttgacatgctaacaacttatggcttagcatttaagtctttgtaattaaaat |
195 |
Q |
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| T |
13795753 |
ggcacgatgatgttgtagtgcgcgatttgacatgctaacaacttatggcttagcatttaagtcttgataattaaaat |
13795677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 143 - 375
Target Start/End: Original strand, 16025213 - 16025445
Alignment:
| Q |
143 |
atttgacatgctaacaacttatggcttagcatttaagtctttgtaattaaaatatgagaattagtttcactgtagaaagaagatcgtgcatcatctatac |
242 |
Q |
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|||||||| ||||||||||||||||||||| | | ||||| |||| ||||||||||| || ||||| | ||||||||||| ||| | ||| | || ||| |
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| T |
16025213 |
atttgacaatctaacaacttatggcttagcaatcaggtcttggtaactaaaatatgagcatcagttttattgtagaaagaacatcatacattaactgtac |
16025312 |
T |
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| Q |
243 |
atgcactatgagctgcatcaatcatgatataatactcgagtaaattcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatct |
342 |
Q |
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| T |
16025313 |
ccacactacaggctggatgaatcatgttataacacttgagtgaagtctaggagagaaaacatcacatagaagtgaaaatctagtttgtaacacgatgtct |
16025412 |
T |
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| Q |
343 |
taataattcgacaactgatagttgatggcacaa |
375 |
Q |
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| T |
16025413 |
ctagaattcgtcaactgacagttgatggcacaa |
16025445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 14366341 - 14366254
Alignment:
| Q |
27 |
ttttcattgaatatgagttatt-tgaaatcaatcattctcatcaatgttatcaattatggatcatgagcaattgcaatttgttcaaat |
113 |
Q |
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| T |
14366341 |
ttttcattgaatatgagaaagtgtgaaagcgatcattctcatcaatgttatcaatcatgaatcgcgagaaattgcaatttgttcaaat |
14366254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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