View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18911_low_6 (Length: 318)
Name: NF18911_low_6
Description: NF18911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18911_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 26795404 - 26795693
Alignment:
| Q |
11 |
cacagatacatttttgaagacctatcatcatcatcattgtcaacatggcttatccttatccaacacagccatctgcctctgcaccaatgccgccactccc |
110 |
Q |
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| T |
26795404 |
cacagatacatttttgaagacctatcatcatcatcattgtcaacatggcttatccttatccagcacagccatctgcctctgcaccaatgccgccactccc |
26795503 |
T |
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| Q |
111 |
caccgccgccatattcggtcctcaatattgtgctccgtatccggtggatcttgccgtggtgaaaaaggtgatgaccatttcagacggaaacttcgctgtt |
210 |
Q |
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| T |
26795504 |
caccgccgccatattcggtcctcaatattgtgctccgtatccggtggatcttgccgtggtgaaaaaggtgatgaccatttcagacggaaacttcgctgtt |
26795603 |
T |
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| Q |
211 |
actgatgtcaacggcaatattgtcttcaaagttaaaggctctctcttaaccctccgtgatcgccgtgtcttgcttgatgctgctggtaac |
300 |
Q |
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| T |
26795604 |
actgatgtcaacggcaatattgtcttcaaagttaaaggctctctcttaaccctccgtgatcgccgtgtcttgcttgatgctgctggtaac |
26795693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 40 - 297
Target Start/End: Original strand, 26800224 - 26800481
Alignment:
| Q |
40 |
atcatcattgtcaacatggcttatccttatccaacacagccatctgcctctgcacca---atgccgccactccccaccgccgccatattcggtcctcaat |
136 |
Q |
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|||||||| |||| |||||||||||||||| | |||||| || ||| |||||||| |||||| ||| |||||| ||| |||||||| | |||| |
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| T |
26800224 |
atcatcatcgtcattatggcttatccttatcaaccacagcaatatgcttctgcaccgccgatgccggcacaccccactgcc---atattcggacagcaat |
26800320 |
T |
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| Q |
137 |
attgtgctccgtatccggtggatcttgccgtggtgaaaaaggtgatgaccatttcagacggaaacttcgctgttactgatgtcaacggcaatattgtctt |
236 |
Q |
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| T |
26800321 |
attgtgctccatatccggtggatttggctgtcgtgaaaaaggttatgaccatttcagatggaaactttgccgtcactgatgtcaacggcaacatcgtgtt |
26800420 |
T |
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| Q |
237 |
caaagttaaaggctctctcttaaccctccgtgatcgccgtgtcttgcttgatgctgctggt |
297 |
Q |
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|||||| ||||| |||||||||||||||||||| |||||||||||| ||||||| |||||| |
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| T |
26800421 |
caaagtaaaaggttctctcttaaccctccgtgaccgccgtgtcttggttgatgccgctggt |
26800481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 290
Target Start/End: Original strand, 26805326 - 26805576
Alignment:
| Q |
40 |
atcatcattgtcaacatggcttatccttatccaacacagccatctgcctctgcacca---atgccgccactccccaccgccgccatattcggtcctcaat |
136 |
Q |
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||||||| | ||| ||||||||||||||||| | |||| ||||||||||||||||| |||||| || || ||| || ||||| || ||||||| |
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| T |
26805326 |
atcatcactatcatcatggcttatccttatcaaccacaaccatctgcctctgcaccgccgatgccggtgcttccaaccacc---atatttggccctcaat |
26805422 |
T |
|
| Q |
137 |
attgtgctccgtatccggtggatcttgccgtggtgaaaaaggtgatgaccatttcagacggaaacttcgctgttactgatgtcaacggcaatattgtctt |
236 |
Q |
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| T |
26805423 |
attgtgctccgtatccattggatttggctgtggtcaaaaaggtgatagcaatttcagacggaaacttcgtcgtcaccgatgtcaacggcaatattgtctt |
26805522 |
T |
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| Q |
237 |
caaagttaaaggctctctcttaaccctccgtgatcgccgtgtcttgcttgatgc |
290 |
Q |
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| T |
26805523 |
caaagttaaagtttctcttttaaccttccgtgaccgccgtgtcttggttgatgc |
26805576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 54 - 300
Target Start/End: Original strand, 26836043 - 26836283
Alignment:
| Q |
54 |
catggcttatccttatccaacacagccatctgcctctgcaccaatgccgccactccccaccgccgccatattcggtcctcaatattgtgctccgtatccg |
153 |
Q |
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||||||||||||||||| | |||| || ||| |||||||||| ||||| |||||||||||| || ||| | || |||||||||||| |||| |||||| |
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| T |
26836043 |
catggcttatccttatcaaccacaaccttcttcctctgcaccgatgccaccactccccaccacc---ataataggccctcaatattgtactccatatccg |
26836139 |
T |
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| Q |
154 |
gtggatcttgccgtggtgaaaaaggtgatgaccatttcagacggaaacttcgctgttactgatgtcaacggcaatattgtcttcaaagttaaaggctctc |
253 |
Q |
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||||| || || |||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||| || || ||||||||||| || ||| |
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| T |
26836140 |
gtggaactcgcggtggtgaaaaaggtgatgaccattgcagac---aacttaaccgttactgatgtcaacggcaacatagttttcaaagttaagggttctg |
26836236 |
T |
|
| Q |
254 |
tcttaaccctccgtgatcgccgtgtcttgcttgatgctgctggtaac |
300 |
Q |
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| || ||| | ||||| | |||||||||| ||||||| || |||||| |
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| T |
26836237 |
tgtttaccatacgtgaccaccgtgtcttggttgatgcggccggtaac |
26836283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 109 - 290
Target Start/End: Original strand, 26789595 - 26789773
Alignment:
| Q |
109 |
cccaccgccgccatattcggtcctcaatattgtgctccgtatccggtggatcttgccgtggtgaaaaaggtgatgaccatttcagacggaaacttcgctg |
208 |
Q |
| |
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|||||| || |||||||||| |||||||||||||||| || ||||||||| | || || ||||||||||| |||||||| ||||| |||||| ||| |
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| T |
26789595 |
cccaccaccaccatattcggctctcaatattgtgctccttaaccggtggatttagcggttgtgaaaaaggtaatgaccatggcagac---aacttcactg |
26789691 |
T |
|
| Q |
209 |
ttactgatgtcaacggcaatattgtcttcaaagttaaaggctctctcttaaccctccgtgatcgccgtgtcttgcttgatgc |
290 |
Q |
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||| |||||||| ||||| | || || ||||| ||||| |||||||||||||||||||| |||||||||||| ||||||| |
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| T |
26789692 |
ttaaagatgtcaatggcaacgtcgtgtttaaagtcaaaggttctctcttaaccctccgtgaccgccgtgtcttggttgatgc |
26789773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 26824241 - 26824300
Alignment:
| Q |
130 |
cctcaatattgtgctccgtatccggtggatcttgccgtggtgaaaaaggtgatgaccatt |
189 |
Q |
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||||||||||||| ||||||||||||| || | ||||| ||||||||||||||||||||| |
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| T |
26824241 |
cctcaatattgtgatccgtatccggtgaatttggccgtagtgaaaaaggtgatgaccatt |
26824300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 26824077 - 26824134
Alignment:
| Q |
38 |
tcatcatcattgtcaacatggcttatccttatccaacacagccatctgcctctgcacc |
95 |
Q |
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||||||| ||| ||| ||||||||||||||||| | |||| || |||||||||||||| |
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| T |
26824077 |
tcatcattattatcatcatggcttatccttatcaaccacaaccttctgcctctgcacc |
26824134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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