View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18912_high_1 (Length: 251)
Name: NF18912_high_1
Description: NF18912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18912_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 68 - 233
Target Start/End: Complemental strand, 7349737 - 7349578
Alignment:
| Q |
68 |
catttaacatcttttctagttttgcatcaatacttattcaattttaatgtcaatttaactttaacaaaggtagcttcctcttaatcgttgacaatttgaa |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7349737 |
catttaacatcttttctagttttgcatcaatacttattcaattttaatgtcaatttaac------aaaggtagcttcctcttcatcgttgacaatttgaa |
7349644 |
T |
|
| Q |
168 |
tattactcaaaaatgtataaaaatgttaattagattttgaatgcagttacataccttccttttatt |
233 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7349643 |
tattactcaaaaatgtatgaaaatgttaattagattttgaatgcagttgcataccttccttttatt |
7349578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 24259190 - 24259034
Alignment:
| Q |
70 |
tttaacatcttttctagttttgcatcaatacttattcaattttaatgtcaatttaactttaacaaaggtagcttcctcttaatcgttgacaatttgaata |
169 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
24259190 |
tttaacatcttttctaattttgcatcaatacttattcatttttaatgtcaatttaac------aaaggtagctacctcttcatcgttgacaattggaata |
24259097 |
T |
|
| Q |
170 |
ttactcaaaaatgtataaaaatgttaattagattttgaatgcagttacataccttccttttat |
232 |
Q |
| |
|
||||| |||||||||| ||||||| ||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
24259096 |
ttactaaaaaatgtatgaaaatgtgaatgagattttgaatgcagttgcataccttccttttat |
24259034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 54933848 - 54934004
Alignment:
| Q |
70 |
tttaacatcttttctagttttgcatcaatacttattcaattttaatgtcaatttaactttaacaaaggtagcttcctcttaatcgttgacaatttgaata |
169 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
54933848 |
tttaacatcttttctaattttgcatcaatacttattcatttttaatgtcaattta------acaaaggtagctacctcttcatcgttgacaattggaata |
54933941 |
T |
|
| Q |
170 |
ttactcaaaaatgtataaaaatgttaattagattttgaatgcagttacataccttccttttat |
232 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
54933942 |
ttactcaaaaatgtatgaaaatgtgaatgagattttgattgcagttgcataccttccttttat |
54934004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University