View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18912_low_1 (Length: 524)
Name: NF18912_low_1
Description: NF18912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18912_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 20 - 506
Target Start/End: Complemental strand, 26643196 - 26642695
Alignment:
| Q |
20 |
tgaattagaaactattctcttcaaatttcgaatagcatattgtgaaaatgatgtgtacgtgatgtagttaaacttaaacatgcttgccagtgcaataaac |
119 |
Q |
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| T |
26643196 |
tgaattagaaactattctcttcaaatttcgaatagcatattgtgaaaatgatgtgtacgtgatgtagttaaacttaaacatgcttgccagtgcaataaac |
26643097 |
T |
|
| Q |
120 |
agcatttgaatgttcaatgcaaacgaatgaagatataccagaacgtgaagtaatcgatgccagtgaaaagttcctgagcctagtaatctcactgatagta |
219 |
Q |
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| T |
26643096 |
agcatttgaatgttcaatgcaaacgaatgaagatataccagaacgtgaagtaatcgatgccagtgaaaagttcctgagcctagtaatctcactgatagta |
26642997 |
T |
|
| Q |
220 |
ttagccttcaaattatcagaaatcacgtctcttccaagcttttgaacatcgctgtttccaatgcacctcaatgcattttcacatgcctattcaccaaaca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26642996 |
ttagccttcaaattatcagaaatcacgtctcttccaagcttttgaacatcgctgtttccaatgcacctcaatgcattttcacatgcctattcaccaaaca |
26642897 |
T |
|
| Q |
320 |
gtaattgctaattaagcatccaaacacaagaaattcaaatttcaaaaactaaaagtgacgaaaactacagaattatattcaaaactaataagtccatttc |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26642896 |
gtaattgctaattaagcatccaaacacaagaaattcaaatttc--aaactaaaagtgacgaaaactacagaattttattcaaaactaataagtccatttc |
26642799 |
T |
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| Q |
420 |
agaaaatgcattaactaagctaaatctcg-----------------aacacgatacactcatagttcgttacctttactgcaactgcatgaaaaccgttc |
502 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
26642798 |
agaaaatgcattaactaagctaaatctcgaattgcacattatcacaaacacaatacacgcatatttcgttacctttactgcaactgcatgaaaaccgttc |
26642699 |
T |
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| Q |
503 |
ttca |
506 |
Q |
| |
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|||| |
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| T |
26642698 |
ttca |
26642695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 126 - 382
Target Start/End: Complemental strand, 26656559 - 26656303
Alignment:
| Q |
126 |
tgaatgttcaatgcaaacgaatgaagatataccagaacgtgaagtaatcgatgccagtgaaaagttcctgagcctagtaatctcactgatagtattagcc |
225 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| ||||||| ||||||| |
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| T |
26656559 |
tgaatgttcaatgcaaaccaatgaagatataccagaacgtgaagtaattgatgtcagtgcaaaattcctgagcctagtaatctcgctgatagcattagcc |
26656460 |
T |
|
| Q |
226 |
ttcaaattatcagaaatcacgtctcttccaagcttttgaacatcgctgtttccaatgcacctcaatgcattttcacatgcctattcaccaaacagtaatt |
325 |
Q |
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|||||||| |||| |||| |||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26656459 |
ttcaaattttcaggaatcgcgtctcttccaagcttttgaacattgttatttccaatgcacctcaatgcattttcacatgcctattcaccaaacaataatt |
26656360 |
T |
|
| Q |
326 |
gctaattaagcatccaaacac--aagaaattcaaatttcaaaaactaaaagtgacgaaa |
382 |
Q |
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||||||| |||| ||||||| || ||| ||||| ||| |||||||||||||||||| |
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| T |
26656359 |
actaattatgcattcaaacacaaaacaaactcaaaattc--aaactaaaagtgacgaaa |
26656303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 506
Target Start/End: Complemental strand, 26656170 - 26656131
Alignment:
| Q |
467 |
ttcgttacctttactgcaactgcatgaaaaccgttcttca |
506 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||||| |
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| T |
26656170 |
ttcgttacctttactgaaacttcatgaaaaccgttcttca |
26656131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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