View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18913_high_2 (Length: 460)
Name: NF18913_high_2
Description: NF18913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18913_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 447
Target Start/End: Complemental strand, 5638071 - 5637641
Alignment:
| Q |
17 |
caagtcaattcatctcacagcttctgtgaaaaccaaagacatttcttatcatataaactcgcaaaatgtcataataccacgcaatgtggaacttcttact |
116 |
Q |
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| T |
5638071 |
caagtcaattcatctcacagcttctgtgaaaaccaaagacatttcttatcatataaactcgcaaaatgtcataataccacgcaatgtggaacttcttact |
5637972 |
T |
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| Q |
117 |
tttgaatatcacgaaaacacaacagtacatactaagaatcctaaatcctttactccagagatactgcgagtgaaaaccnnnnnnntacgaagaatctcga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5637971 |
tttgaatatcacgaaaacacaacagtacatactaagaatcctaaatcctttactccagagatactgcgagtgaaaaccaaaaacatacgaagaatctcga |
5637872 |
T |
|
| Q |
217 |
ttaaaaagctggattcggacatgagtagcagaagataaacttttgttacatataccaccatgtctgaggggatcataataatcaaaatgttacatgttga |
316 |
Q |
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| T |
5637871 |
taaaaaagcaggattcggacatgagtagcagaagataaacttttgttacgtataccaccatgtctgaggggatcataataatcaaaatgttacatgttga |
5637772 |
T |
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| Q |
317 |
gattcaataatgtaagaaagaaaatacttataagcaaagaagataaaaccacactgattatagtttagaacattcaggacatggaaaataacctttggct |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5637771 |
gattcaataatgtaagaaagaaaatacttataagcaaagaagataaaaccacactgattatagtttagaacattcaggacatggaaaataacctttggct |
5637672 |
T |
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| Q |
417 |
tgacatttatcacaagctatcttcttcacct |
447 |
Q |
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| T |
5637671 |
tgacatttatcacaagctatcttcttcacct |
5637641 |
T |
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