View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18913_low_1 (Length: 883)

Name: NF18913_low_1
Description: NF18913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18913_low_1
NF18913_low_1
[»] chr2 (11 HSPs)
chr2 (22-516)||(16315363-16315864)
chr2 (29-521)||(12807740-12808232)
chr2 (97-521)||(32991072-32991496)
chr2 (227-279)||(31071629-31071681)
chr2 (214-264)||(36804155-36804205)
chr2 (214-258)||(18844486-18844530)
chr2 (214-257)||(18489051-18489094)
chr2 (216-255)||(35488082-35488121)
chr2 (214-264)||(36804370-36804420)
chr2 (214-255)||(8066082-8066123)
chr2 (553-602)||(12332002-12332051)
[»] chr8 (9 HSPs)
chr8 (103-387)||(9781257-9781542)
chr8 (598-647)||(37811377-37811426)
chr8 (214-265)||(32266805-32266856)
chr8 (214-265)||(7924629-7924680)
chr8 (214-253)||(12134571-12134610)
chr8 (214-265)||(13396631-13396682)
chr8 (214-265)||(41665215-41665266)
chr8 (214-265)||(172346-172397)
chr8 (214-265)||(8300046-8300097)
[»] chr3 (14 HSPs)
chr3 (23-169)||(7516736-7516882)
chr3 (604-647)||(17027-17070)
chr3 (214-265)||(2364520-2364571)
chr3 (214-265)||(7313019-7313070)
chr3 (214-265)||(10323417-10323468)
chr3 (214-261)||(19920079-19920126)
chr3 (234-316)||(25132368-25132450)
chr3 (214-265)||(34332661-34332712)
chr3 (213-258)||(9509996-9510041)
chr3 (213-258)||(9517971-9518016)
chr3 (234-295)||(17271498-17271559)
chr3 (214-279)||(17620293-17620358)
chr3 (214-255)||(18368811-18368852)
chr3 (213-266)||(44888146-44888199)
[»] chr5 (6 HSPs)
chr5 (209-276)||(23878387-23878454)
chr5 (214-265)||(23238627-23238678)
chr5 (214-265)||(27117007-27117058)
chr5 (214-265)||(30732160-30732211)
chr5 (214-265)||(42513963-42514014)
chr5 (214-265)||(12825442-12825493)
[»] chr4 (11 HSPs)
chr4 (181-298)||(35324178-35324295)
chr4 (598-647)||(42060268-42060317)
chr4 (214-265)||(23642437-23642488)
chr4 (214-266)||(15740464-15740516)
chr4 (542-602)||(42059568-42059628)
chr4 (213-264)||(4640526-4640577)
chr4 (214-265)||(19755510-19755561)
chr4 (214-265)||(19784245-19784296)
chr4 (214-265)||(47419047-47419098)
chr4 (214-316)||(29133109-29133211)
chr4 (214-279)||(28713150-28713215)
[»] scaffold0472 (1 HSPs)
scaffold0472 (214-265)||(3495-3546)
[»] chr7 (10 HSPs)
chr7 (21-129)||(43004031-43004139)
chr7 (214-265)||(4937974-4938025)
chr7 (214-265)||(11277098-11277149)
chr7 (214-257)||(11338990-11339033)
chr7 (213-264)||(22819564-22819615)
chr7 (214-265)||(29968217-29968268)
chr7 (214-276)||(28173811-28173873)
chr7 (215-265)||(37919788-37919838)
chr7 (214-255)||(18671413-18671454)
chr7 (211-316)||(27544408-27544513)
[»] scaffold0034 (1 HSPs)
scaffold0034 (214-265)||(105689-105740)
[»] chr6 (3 HSPs)
chr6 (214-265)||(21168442-21168493)
chr6 (214-258)||(26513967-26514011)
chr6 (216-255)||(9565612-9565651)
[»] chr1 (7 HSPs)
chr1 (214-265)||(6050846-6050897)
chr1 (214-265)||(11908951-11909002)
chr1 (213-266)||(22191626-22191679)
chr1 (214-258)||(26805204-26805248)
chr1 (214-265)||(35541292-35541343)
chr1 (553-602)||(4433967-4434016)
chr1 (553-602)||(25665762-25665811)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-117; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 22 - 516
Target Start/End: Complemental strand, 16315864 - 16315363
Alignment:
Q  22 ccaagcgaacacggaaaccttcaatggaacgtccttcctccaaagtattgccgatgggacatgcatagtggtggacggctctgatgtgagcactcaataa 121  Q
    |||||| |||| |||||||||||| ||||||||||||||||||||||  || | |||||||||||| ||||||| |||| | ||||||||||||| ||||    
T  16315864 ccaagcaaacatggaaaccttcaacggaacgtccttcctccaaagtaaagctgttgggacatgcatcgtggtgggcggcccagatgtgagcactcgataa 16315765  T
Q  122 gcaccacttacaatgtaaccaacgaccagatcagatgtccatctccaagaatcctcaagatcaacatgcaacaaaacatttaacaacatattcctacact 221  Q
    |||||||| ||| | || || ||||||||||||| |||||||||||||||| ||||||||||||| ||||||| || ||||| || ||||||||||||||    
T  16315764 gcaccactaacagtatatcccacgaccagatcaggtgtccatctccaagaaccctcaagatcaacctgcaacacaatatttagcagcatattcctacact 16315665  T
Q  222 cctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaaccccaagcaaacatttgtgccacagtctc 321  Q
    |||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| || |||||||| |||  ||| ||||||||||| ||| || |    
T  16315664 cctctaccaaggcctcctcccacgcccacaacctactacgccagttccaagcctctcctccctcatcccagcccatagccaacatttgtgcaacaatcgc 16315565  T
Q  322 cattttataat-tgacaagtcaaacaaatggcgaaacctaacacaaagagggacctcacctacacacttatccaaccaataaagagagctaactctattt 420  Q
    ||||||||  | ||| |||||||||||| |||| ||||||| ||||||||| |||||||  || ||| ||||||||||| |||||||||||||||   ||    
T  16315564 cattttatcttctgataagtcaaacaaacggcggaacctaatacaaagaggtacctcactaacccacctatccaaccaaaaaagagagctaactccgctt 16315465  T
Q  421 ccaacactaagacgtaaattttcaggaaaccaactatccgacatcgcaccatcaccatcacggt------tactagctatcgtccttcaccacaccgacc 514  Q
    || ||| | ||||||||||||||| |||||||| ||  ||| | |||||||||||||||||  |      |||||||||||||| | |||||||||||||    
T  16315464 ccgacaatgagacgtaaattttcaagaaaccaaatactcgataccgcaccatcaccatcaccatctcaaatactagctatcgtcttccaccacaccgacc 16315365  T
Q  515 cc 516  Q
    ||    
T  16315364 cc 16315363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 29 - 521
Target Start/End: Complemental strand, 12808232 - 12807740
Alignment:
Q  29 aacacggaaaccttcaatggaacgtccttcctccaaagtattgccgatgggacatgcatagtggtggacggctctgatgtgagcactcaataagcaccac 128  Q
    |||||||||| ||||| ||||||||||||||| |||||||  |||  |||||||| |||| |||||| | ||   ||||||||||||  |||||||||||    
T  12808232 aacacggaaatcttcagtggaacgtccttccttcaaagtaaagccattgggacattcataatggtgggcagcctagatgtgagcacttgataagcaccac 12808133  T
Q  129 ttacaatgtaaccaacgaccagatcagatgtccatctccaagaatcctcaagatcaacatgcaacaaaacatttaacaacatattcctacactcctctac 228  Q
    | |   | || || |||||| ||||||  ||| |||||||||||||||||| |||||| ||||||| |||| ||| ||||||||||| ||||||||||||    
T  12808132 taatggtatatcccacgaccggatcaggcgtcaatctccaagaatcctcaatatcaacctgcaacacaacagttagcaacatattcccacactcctctac 12808033  T
Q  229 caaggcctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaaccccaagcaaacatttgtgccacagtctccatttta 328  Q
    ||| |||||||||||||||||||||||||||| |||||| ||||||||||| || |||||||| ||||||| |||||||||||| ||| || ||||||||    
T  12808032 caacgcctcctcccacgcccacaacctcctacaccacttccaagcctctcctccctcatcccagccccaaggaaacatttgtgcaacaatcgccatttta 12807933  T
Q  329 taat-tgacaagtcaaacaaatggcgaaacctaacacaaagagggacctcacctacacacttatccaaccaataaagagagctaactctatttccaacac 427  Q
    |  | ||| ||||||||||||  || ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| | ||| | ||||  |||     
T  12807932 ttttctgataagtcaaacaaacagcaaaacctaacacaatgagggacctcacctacccacttatccaaccaa-aaagagagatgactttgtttctgacaa 12807834  T
Q  428 taagacgtaaattttcaggaaaccaactatccgacatcgcaccatcaccatcacggttactagctatcgtccttcaccacaccgacccctcccg 521  Q
    | ||||||||||| | ||||||||||||| ||| || ||||||||||||||| ||| | |||||||||||||| |||| |||||||||||||||    
T  12807833 tgagacgtaaattgttaggaaaccaactacccgccaccgcaccatcaccatctcggatgctagctatcgtcctccaccgcaccgacccctcccg 12807740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 97 - 521
Target Start/End: Complemental strand, 32991496 - 32991072
Alignment:
Q  97 cggctctgatgtgagcactcaataagcaccacttacaatgtaaccaacgaccagatcagatgtccatctccaagaatcctcaagatcaacatgcaacaaa 196  Q
    |||| ||||||||||||| | |||||||||||| ||| ||||  | || |||  |||||  | ||||||||| |||||||||| | |||  ||||||| |    
T  32991496 cggccctgatgtgagcacactataagcaccactgacagtgtacacgacaaccgtatcaggagaccatctccaggaatcctcaacaacaatctgcaacaca 32991397  T
Q  197 acatttaacaacatattcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaacccc 296  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||| | ||| |||||||| |||||||| ||  | |||||| ||||||    
T  32991396 acatgtaacaacatattcctacactcctctaccaacgcctcctcccacacccacaatccccttcgccacttccaagcctccccttcctcatcctaacccc 32991297  T
Q  297 aagcaaacatttgtgccacagtctccatttta-taattgacaagtcaaacaaatggcgaaacctaacacaaagagggacctcacctacacacttatccaa 395  Q
    |||| ||| |||| || || ||| |||||||| |  |||| || ||| ||||| ||||||||||||||   | ||| ||| ||||||| ||| |||||||    
T  32991296 aagc-aacgtttgagcaacggtcgccattttattttttgataactcatacaaacggcgaaacctaacattcaaaggaaccacacctacccacctatccaa 32991198  T
Q  396 ccaataaagagagctaactctatttccaacactaagacgtaaattttcaggaaaccaactatccgacatcgcaccatcaccatcacggttactagctatc 495  Q
    |||| ||||||||||| | | ||| |||||| | ||||||||||| ||||||||| |||||   |||| |   ||||| ||||| ||  |  || |||||    
T  32991197 ccaaaaaagagagctagcaccattaccaacattgagacgtaaattgtcaggaaacaaactacttgacaccaagccatctccatctcgaatgttaactatc 32991098  T
Q  496 gtccttcaccacaccgacccctcccg 521  Q
    ||||| ||||||||||||| ||||||    
T  32991097 gtcctccaccacaccgacctctcccg 32991072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 31071681 - 31071629
Alignment:
Q  227 accaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctcc 279  Q
    |||||| ||||||||||  |||||||||||||||||||||| |||||||||||    
T  31071681 accaagtcctcctcccaatcccacaacctcctacgccacttccaagcctctcc 31071629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 36804155 - 36804205
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgcca 264  Q
    |||||||||||||| |||| |||||||||||||||||||||| | ||||||    
T  36804155 cctacactcctctaacaagtcctcctcccacgcccacaaccttcgacgcca 36804205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 18844530 - 18844486
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcct 258  Q
    |||||||||||| |||||  |||||||||||||||||||||||||    
T  18844530 cctacactcctccaccaactcctcctcccacgcccacaacctcct 18844486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 18489051 - 18489094
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcc 257  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||    
T  18489051 cctacactcctctactaattcctcctcccacgcccacaacctcc 18489094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 255
Target Start/End: Original strand, 35488082 - 35488121
Alignment:
Q  216 tacactcctctaccaaggcctcctcccacgcccacaacct 255  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  35488082 tacactcctctagcaaagcctcctcccacgcccacaacct 35488121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 36804370 - 36804420
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgcca 264  Q
    |||||||||||||| |||| |||||||||||||| ||||||| | ||||||    
T  36804370 cctacactcctctaacaagtcctcctcccacgcctacaaccttcgacgcca 36804420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 8066123 - 8066082
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacct 255  Q
    |||||||||||||| ||  |||||||||||||||||||||||    
T  8066123 cctacactcctctagcatagcctcctcccacgcccacaacct 8066082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 602
Target Start/End: Complemental strand, 12332051 - 12332002
Alignment:
Q  553 agaggatgaaatagaggccaatgaattaattagatggttgtgattaaaag 602  Q
    ||||||||||| || ||||| || ||||||||||||| ||||||||||||    
T  12332051 agaggatgaaacagtggccattggattaattagatggctgtgattaaaag 12332002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 103 - 387
Target Start/End: Complemental strand, 9781542 - 9781257
Alignment:
Q  103 tgatgtgagcactcaataagcaccacttacaatgtaaccaacgaccagatcagatgtccatctccaagaatcctcaagatcaacatgcaacaaaacattt 202  Q
    |||||||||||||| |||||||||||| ||| |||| || |||| | |||||| | |||| ||||| || ||||||  |||||| ||||  |||||||||    
T  9781542 tgatgtgagcactcgataagcaccactgacagtgtatcccacgatcggatcaggtatccaactccaggagtcctcagtatcaacctgcattaaaacattt 9781443  T
Q  203 aacaacatattcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaaccccaagcaa 302  Q
    | || |||||| |||||||| |||| |||  |||||||||| ||| |||| || ||||||||| |  ||||||| ||||| |||||||| |||||| |||    
T  9781442 agcagcatattgctacactcatctaacaaaccctcctcccatgcctacaatcttctacgccacctcaaagcctcaccaccctcatcccatccccaaacaa 9781343  T
Q  303 acatttgtgccacagtctccatttta-taattgacaagtcaaacaaatggcgaaacctaacacaaagagggacctcacctacacac 387  Q
    |||||||||| | |||| |||||||| |  ||||||| ||||||||| | |||||  |||||||||||||||||||||||| ||||    
T  9781342 acatttgtgctatagtcgccattttattttttgacaaatcaaacaaacgacgaaatttaacacaaagagggacctcacctatacac 9781257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 598 - 647
Target Start/End: Original strand, 37811377 - 37811426
Alignment:
Q  598 aaaaggaaacgtagctggttggtgttccgccatagccatcttcccaaaag 647  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  37811377 aaaaggaaacgtagctggttggttttccgccatagccatctttccaaaag 37811426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 32266805 - 32266856
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  32266805 cctacactcctctaccaactcctcctcccaggcccacaacctcctacgccac 32266856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 7924629 - 7924680
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  7924629 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 7924680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 12134571 - 12134610
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaac 253  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  12134571 cctacactcctctaccaagtcctcctcccacgcccacaac 12134610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 13396631 - 13396682
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  13396631 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 13396682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 41665266 - 41665215
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  41665266 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 41665215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 172346 - 172397
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||   ||||||||| |||||||||| ||||||||||    
T  172346 cctacactcctctaccaacttctcctcccaggcccacaaccgcctacgccac 172397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 8300046 - 8300097
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| || |||||||    
T  8300046 cctacactcctctaccaactcctcctcccaagcccacaaccgccgacgccac 8300097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 7516736 - 7516882
Alignment:
Q  23 caagcgaacacggaaaccttcaatggaacgtccttcctccaaagtattgccgatgggacatgcatagtggtggacggctctgatgtgagcactcaataag 122  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||  |  | ||||| |||||||||||||| |||| | ||  ||| |||||||||||    
T  7516736 caagcaaacacgaaaaccttcaatggaacgtccttcctccaaagtaaagttgttgggaaatgcatagtggtgggcggccccgacatgatcactcaataag 7516835  T
Q  123 caccacttacaatgtaaccaacgaccagatcagatgtccatctccaa 169  Q
    |||||||  || | || || |||||  |||||| |||||||||||||    
T  7516836 caccactggcagtatatcccacgactggatcaggtgtccatctccaa 7516882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 604 - 647
Target Start/End: Complemental strand, 17070 - 17027
Alignment:
Q  604 aaacgtagctggttggtgttccgccatagccatcttcccaaaag 647  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17070 aaacgtagctggttggtgttccgccatagccatcttcccaaaag 17027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 2364520 - 2364571
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  2364520 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 2364571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 7313019 - 7313070
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  7313019 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 7313070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 10323468 - 10323417
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  10323468 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 10323417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 19920126 - 19920079
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacg 261  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||||    
T  19920126 cctacactcctctaccaactcctcctcccaagcccacaacctcctacg 19920079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 25132368 - 25132450
Alignment:
Q  234 cctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaaccccaag-caaacatttgtgccaca 316  Q
    ||||||||||| ||||||||||||| | ||| || ||||||||||| || ||||||| |||||||| |||||||||| ||||||    
T  25132368 cctcctcccacacccacaacctccttctccatttccaagcctctcctccctcatccc-accccaagtcaaacatttgagccaca 25132450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 34332712 - 34332661
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  34332712 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 34332661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 9509996 - 9510041
Alignment:
Q  213 tcctacactcctctaccaaggcctcctcccacgcccacaacctcct 258  Q
    ||||||||||| |||||||  |||||||||| ||||||||||||||    
T  9509996 tcctacactccgctaccaactcctcctcccatgcccacaacctcct 9510041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 9517971 - 9518016
Alignment:
Q  213 tcctacactcctctaccaaggcctcctcccacgcccacaacctcct 258  Q
    ||||||||||| |||||||  |||||||||| ||||||||||||||    
T  9517971 tcctacactccgctaccaactcctcctcccatgcccacaacctcct 9518016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 17271559 - 17271498
Alignment:
Q  234 cctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaaccc 295  Q
    |||||||||||| |||||||||||| | |||| | ||||| ||||||||| | |||||||||    
T  17271559 cctcctcccacgtccacaacctcctcctccacctccaagcatctccaccagcctcccaaccc 17271498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 17620293 - 17620358
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctcc 279  Q
    |||||||||  |||||||  ||| ||||||||||||||||||||| | |||||| || ||||||||    
T  17620293 cctacactctgctaccaactccttctcccacgcccacaacctcctcctccacttccacgcctctcc 17620358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 18368852 - 18368811
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacct 255  Q
    |||||||||||||| ||| |||||||||||| ||||||||||    
T  18368852 cctacactcctctagcaaagcctcctcccacacccacaacct 18368811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 44888146 - 44888199
Alignment:
Q  213 tcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccact 266  Q
    ||||||||||| ||| |||  |||||||||| |||||||||| |||||||||||    
T  44888146 tcctacactcccctaacaattcctcctcccatgcccacaaccgcctacgccact 44888199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 23878454 - 23878387
Alignment:
Q  209 atattcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctc 276  Q
    |||||||| |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  23878454 atattcctccactccactaccaaatcctcctcccacgcccacaacctcctacgccactttcaagcctc 23878387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 23238627 - 23238678
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||  |||||||||||||||||||||    
T  23238627 cctacactcctctaccaactcctcctccctggcccacaacctcctacgccac 23238678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 27117058 - 27117007
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  27117058 cctacactcctctaccaacccctcctcccaggcccacaaccgcctacgccac 27117007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 30732211 - 30732160
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  30732211 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 30732160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 42513963 - 42514014
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  42513963 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 42514014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 12825442 - 12825493
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||| ||||| |||||||||| ||||||||||    
T  12825442 cctacactcctctaccaactcctcatcccaagcccacaaccgcctacgccac 12825493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 181 - 298
Target Start/End: Complemental strand, 35324295 - 35324178
Alignment:
Q  181 atcaacatgcaacaaaacatttaacaacatattcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctcca 280  Q
    |||||| ||||| |||| || | ||||||||||| |||||| | |||||||  |||||||||| |||||||| |||||||||||||| ||| |||| ||     
T  35324295 atcaacctgcaataaaatatctgacaacatattcttacacttcactaccaaatcctcctcccaagcccacaatctcctacgccacttccaaacctcccct 35324196  T
Q  281 ccatcatcccaaccccaa 298  Q
    || |||||||| ||||||    
T  35324195 ccctcatcccacccccaa 35324178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 598 - 647
Target Start/End: Complemental strand, 42060317 - 42060268
Alignment:
Q  598 aaaaggaaacgtagctggttggtgttccgccatagccatcttcccaaaag 647  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42060317 aaaaggaaacatagctggttggtgttccgccatagccatcttcccaaaag 42060268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 23642488 - 23642437
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  23642488 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 23642437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 15740464 - 15740516
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccact 266  Q
    ||||||||||||||||||  |||||||||| |||||||||| |||| ||||||    
T  15740464 cctacactcctctaccaactcctcctcccaagcccacaaccgcctatgccact 15740516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 542 - 602
Target Start/End: Original strand, 42059568 - 42059628
Alignment:
Q  542 catttcaaatgagaggatgaaatagaggccaatgaattaattagatggttgtgattaaaag 602  Q
    |||||||| ||||| ||| |||||| |||||||| ||||||||||||  ||||||||||||    
T  42059568 catttcaagtgagatgataaaatagtggccaatggattaattagatgaatgtgattaaaag 42059628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 4640577 - 4640526
Alignment:
Q  213 tcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgcca 264  Q
    ||||||||||||||| |||| |||||||||| ||||||||||| | ||||||    
T  4640577 tcctacactcctctaacaagtcctcctcccaagcccacaaccttcgacgcca 4640526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 19755510 - 19755561
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||| | |||||||||| ||||||||||    
T  19755510 cctacactcctctaccaactcctcctcctaagcccacaaccgcctacgccac 19755561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 19784296 - 19784245
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||| | |||||||||| ||||||||||    
T  19784296 cctacactcctctaccaactcctcctcctaagcccacaaccgcctacgccac 19784245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 47419047 - 47419098
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    |||||||||||||||||   |||||||||| |||||||||| ||||||||||    
T  47419047 cctacactcctctaccacctcctcctcccaagcccacaaccgcctacgccac 47419098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 29133109 - 29133211
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaaccccaagcaaacatttgtgcc 313  Q
    ||||||||||| || |||  | ||||||||| |||| | |||||| |||||||| ||||| || |||||| ||||||| |||||   ||||||||| |||    
T  29133109 cctacactcctttaacaattcttcctcccacacccaaagcctcctccgccacttccaagcttccccaccaacatcccacccccattgaaacatttgcgcc 29133208  T
Q  314 aca 316  Q
    |||    
T  29133209 aca 29133211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 28713215 - 28713150
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctcc 279  Q
    |||||||||  |||||||  |||||||||||||||||| |||||| | |||||| || ||||||||    
T  28713215 cctacactctgctaccaactcctcctcccacgcccacagcctcctcctccacttccacgcctctcc 28713150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 3495 - 3546
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  3495 cctacactcctctaccaactcctcctcccaggcccacaacctcctacgccac 3546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 43004139 - 43004031
Alignment:
Q  21 gccaagcgaacacggaaaccttcaatggaacgtccttcctccaaagtattgccgatgggacatgcatagtggtggacggctctgatgtgagcactcaata 120  Q
    ||||||| || ||||| ||||| | | |||||||||||||||||||||  | || ||| |||||||||||||||| || | ||||||  |||| || |||    
T  43004139 gccaagcaaagacggagacctttagtagaacgtccttcctccaaagtaaagtcgttggaacatgcatagtggtgggcgcccctgatgcaagcattcgata 43004040  T
Q  121 agcaccact 129  Q
    |||||||||    
T  43004039 agcaccact 43004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 4938025 - 4937974
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  4938025 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 4937974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 11277149 - 11277098
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  11277149 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 11277098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 11338990 - 11339033
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcc 257  Q
    |||||||||||||||||   ||||||||||||||||||||||||    
T  11338990 cctacactcctctaccatttcctcctcccacgcccacaacctcc 11339033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 22819615 - 22819564
Alignment:
Q  213 tcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgcca 264  Q
    ||||||||||| ||| |||  |||||||||| ||||||||||||||||||||    
T  22819615 tcctacactcccctaacaactcctcctcccaggcccacaacctcctacgcca 22819564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 29968217 - 29968268
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  ||||||| || ||||| |||||||||||||||    
T  29968217 cctacactcctctaccaattcctcctctcaagcccataacctcctacgccac 29968268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 28173873 - 28173811
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctc 276  Q
    |||||||||| |||||||  ||||||||||||||||||| ||||| | |||||| || |||||    
T  28173873 cctacactccgctaccaactcctcctcccacgcccacaatctcctcctccacttccacgcctc 28173811  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 37919788 - 37919838
Alignment:
Q  215 ctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    |||||||||||||||||   ||||||||| |||||||||| ||||||||||    
T  37919788 ctacactcctctaccaacttctcctcccaagcccacaaccgcctacgccac 37919838  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 18671413 - 18671454
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacct 255  Q
    |||||||||||||| ||| ||||||||||| |||||||||||    
T  18671413 cctacactcctctaacaaagcctcctcccatgcccacaacct 18671454  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 27544513 - 27544408
Alignment:
Q  211 attcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccactttcaagcctctccaccatcatcccaaccccaagcaaacatttgt 310  Q
    ||||||||||||| ||||||   |||||||||||||||| |  ||||| | |||||| |||||||| || || ||| | || |||| ||||||||| ||     
T  27544513 attcctacactccactaccatttcctcctcccacgcccatagtctccttctccacttccaagcctcccctccctcacctcaccccctagcaaacatctgc 27544414  T
Q  311 gccaca 316  Q
    ||||||    
T  27544413 gccaca 27544408  T

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Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 105740 - 105689
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  105740 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 105689  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 21168442 - 21168493
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  21168442 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 21168493  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 26513967 - 26514011
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcct 258  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||    
T  26513967 cctacactcctctaccaactcctcctcccaagcccacaacctcct 26514011  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 255
Target Start/End: Original strand, 9565612 - 9565651
Alignment:
Q  216 tacactcctctaccaaggcctcctcccacgcccacaacct 255  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  9565612 tacactcctctagcaaagcctcctcccacgcccacaacct 9565651  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 6050846 - 6050897
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  6050846 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 6050897  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 11909002 - 11908951
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  11909002 cctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 11908951  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 22191679 - 22191626
Alignment:
Q  213 tcctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccact 266  Q
    ||||||||||| |||||||  |||||||||| |||||||||| |||||||||||    
T  22191679 tcctacactcccctaccaactcctcctcccatgcccacaaccgcctacgccact 22191626  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 26805204 - 26805248
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcct 258  Q
    ||||||||||||||||| | ||||||||||||||||||| |||||    
T  26805204 cctacactcctctaccatgtcctcctcccacgcccacaatctcct 26805248  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 35541292 - 35541343
Alignment:
Q  214 cctacactcctctaccaaggcctcctcccacgcccacaacctcctacgccac 265  Q
    ||||||||||||||||||  |||||||||| |||||||||| || |||||||    
T  35541292 cctacactcctctaccaactcctcctcccaagcccacaaccgccgacgccac 35541343  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 602
Target Start/End: Original strand, 4433967 - 4434016
Alignment:
Q  553 agaggatgaaatagaggccaatgaattaattagatggttgtgattaaaag 602  Q
    ||||||||||| || ||||| || ||||||||||||| ||||||||||||    
T  4433967 agaggatgaaacagtggccattggattaattagatggctgtgattaaaag 4434016  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 602
Target Start/End: Original strand, 25665762 - 25665811
Alignment:
Q  553 agaggatgaaatagaggccaatgaattaattagatggttgtgattaaaag 602  Q
    ||||||||||| || ||||| || ||||||||||||| ||||||||||||    
T  25665762 agaggatgaaacagtggccattggattaattagatggctgtgattaaaag 25665811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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