View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18913_low_10 (Length: 337)
Name: NF18913_low_10
Description: NF18913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18913_low_10 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 36204060 - 36204266
Alignment:
| Q |
23 |
acttaggaaataaagcttgatccaagattgacatcatttattaagaaagatgattcatttctcacacgttggagttgggatcccaatgcttccaagaatg |
122 |
Q |
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| T |
36204060 |
acttaggaaataaagcttgatccaagattgacatcatttattaagaaagataattcatttctcacacgttggagttgggaccccaatgcttccaagaatg |
36204159 |
T |
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| Q |
123 |
agcttggttctacttctaccaaagaaggagagaatctttcttttcctcctgaatcatattttagtcatgaggtacttatttttccttgtttaatgtccag |
222 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36204160 |
agcttggttctacttctacca---aaggagagaatctttcttttcctcctgaatcatattttagtcatgaggtacttgtttttccttgtttaatgtccag |
36204256 |
T |
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| Q |
223 |
ctttgtggtt |
232 |
Q |
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|||||||||| |
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| T |
36204257 |
ctttgtggtt |
36204266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 36204286 - 36204388
Alignment:
| Q |
226 |
tgtggttgctatgtaatccttcttgccctttctggtcatgattgtgttttgtacaatgcatgcatgtgatcaattgttaaaggatgttttggtatagaat |
325 |
Q |
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| T |
36204286 |
tgtggttgctatgtaatccttcttgccctttctggtcatgattgtgttttgtacaatgcatgcatgtgatcaattgttaaaggatgttttggtatagaat |
36204385 |
T |
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| Q |
326 |
tat |
328 |
Q |
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||| |
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| T |
36204386 |
tat |
36204388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 249305 - 249230
Alignment:
| Q |
27 |
aggaaataaagcttgatccaagattgacatcatttattaagaaagatgattcatttctcacacgttggagttggga |
102 |
Q |
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| T |
249305 |
aggaaataatgattgatgcaagattcacatcttttcttaagaaagataattcttttctcacaccatggagttggga |
249230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 11068900 - 11068815
Alignment:
| Q |
38 |
cttgatccaagattgacatcatttattaagaaagatgattcatttctcacacgttggagttgggatcccaatgcttccaagaatga |
123 |
Q |
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| T |
11068900 |
cttgattcaagattcacatcttttcttgagaaagatcattcttttctcactccatggagttggaaccctaatgcttccaagaatga |
11068815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 11068504 - 11068470
Alignment:
| Q |
289 |
atgtgatcaattgttaaaggatgttttggtataga |
323 |
Q |
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| T |
11068504 |
atgtgatcaattgttaaagaatgttttggtataga |
11068470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 49348192 - 49348117
Alignment:
| Q |
27 |
aggaaataaagcttgatccaagattgacatcatttattaagaaagatgattcatttctcacacgttggagttggga |
102 |
Q |
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| T |
49348192 |
aggaaataatgattgatgcaagattcacatcttttcttgagaaagataattcttttctcacaccatggagttggga |
49348117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 42201926 - 42201991
Alignment:
| Q |
37 |
gcttgatccaagattgacatcatttattaagaaagatgattcatttctcacacgttggagttggga |
102 |
Q |
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| T |
42201926 |
gcttgatgcaagatttacatcttttcttgagaaagataattcttttctcacaccatggagttggga |
42201991 |
T |
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