View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18913_low_11 (Length: 328)
Name: NF18913_low_11
Description: NF18913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18913_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 532324 - 532013
Alignment:
| Q |
1 |
aattttaaatttaaataatctcttctttctacttagcttttctaaattttccttttcaca--gggtcaaaccaaggcctagaccggtgaaacaagggttt |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
532324 |
aattttaaatttaaataatctcttctttctacttagcttttctaaattttccttttcacacagggtcaaaccaaggcctagaccggtgaaacaagggttt |
532225 |
T |
|
| Q |
99 |
tacgtacaaattttgtgtttgattatataatcgannnnnnnnnnctttctaagaaaatatatttatcaagcaataaagaagacaaaaccaatatgtagtg |
198 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
532224 |
tacgtacaaattttgtgtttgattatataatcgattttttttt-ctttttaagaaaatatatttatcaagcaataaagaagacaaaaccaatatgtagtg |
532126 |
T |
|
| Q |
199 |
attgaaatgtttagtagtttgtctttaagacactttcactcgctctaaggtttaaattttcgtaatggaaatataatcgtatatgttggtagacaaattg |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
532125 |
attgaaatgtttagtagtttgtctttaagacactttcactcgctctaaggtttaaattttcgtaatggaaatataattgtatatgttggtagacaaattg |
532026 |
T |
|
| Q |
299 |
tctctttactcat |
311 |
Q |
| |
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||||||||||||| |
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| T |
532025 |
tctctttactcat |
532013 |
T |
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