View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18913_low_13 (Length: 277)
Name: NF18913_low_13
Description: NF18913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18913_low_13 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 18245857 - 18246114
Alignment:
| Q |
20 |
cccggtgcttcggaggtgttggttgttattcaaggaacaatctgtgctggttttgtttcctctgccaacactgtttacatcaaaacactttacaaaggtg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18245857 |
cccggtgcttcggaggtgttggttgttattcaaggaacaatctgtgctggttttgtttcctctgccaacactgtttacattaaaacactttacaaaggtg |
18245956 |
T |
|
| Q |
120 |
atgttatggtttttccacaaggattgttgcatttccaaattaacagtggtggttctaatgcacttgcttttgttagctttagtagtgctaaccctggttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18245957 |
atgttatggtttttccacaaggattgttgcatttccaaattaacagtggtggttctaatgcacttgcttttgttagctttagtagtgctaaccctggttt |
18246056 |
T |
|
| Q |
220 |
acagatattggattttgctttgtttaaaagtgattttccaacagagttgattactgca |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18246057 |
acagatattggattttgctttgtttaaaagtgattttccaacggagttgattactgca |
18246114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 18252961 - 18253218
Alignment:
| Q |
20 |
cccggtgcttcggaggtgttggttgttattcaaggaacaatctgtgctggttttgtttcctctgccaacactgtttacatcaaaacactttacaaaggtg |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| ||||||| | ||||||||| ||||||||| |
|
|
| T |
18252961 |
cccggtgcttcggaagtgttggttgttattaaaggaacaatcagtgctggttttgtttcctctgacaatgttgtttaccttaaaacacttcacaaaggtg |
18253060 |
T |
|
| Q |
120 |
atgttatggtttttccacaaggattgttgcatttccaaattaacagtggtggttctaatgcacttgcttttgttagctttagtagtgctaaccctggttt |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| ||| |||| |
|
|
| T |
18253061 |
atgttatgatttttccacaaggattgttgcatttccaaattaatgttggtggttctaatgcacttacttttaatagctttagtagtgctaatcctcgttt |
18253160 |
T |
|
| Q |
220 |
acagatattggattttgctttgtttaaaagtgattttccaacagagttgattactgca |
277 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
18253161 |
acagatattggattacgctttgtttgaaagcgattttccaacgaagttgattactgca |
18253218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 18256607 - 18256350
Alignment:
| Q |
20 |
cccggtgcttcggaggtgttggttgttattcaaggaacaatctgtgctggttttgtttcctctgccaacactgtttacatcaaaacactttacaaaggtg |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| ||||||| | ||||||||| ||||||||| |
|
|
| T |
18256607 |
cccggtgcttcggaagtgttggttgttattaaaggaacaatcagtgctggttttgtttcctctgacaatgttgtttaccttaaaacacttcacaaaggtg |
18256508 |
T |
|
| Q |
120 |
atgttatggtttttccacaaggattgttgcatttccaaattaacagtggtggttctaatgcacttgcttttgttagctttagtagtgctaaccctggttt |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| ||| |||| |
|
|
| T |
18256507 |
atgttatgatttttccacaaggattgttgcatttccaaattaatgttggtggttctaatgcacttacttttaatagctttagtagtgctaatcctcgttt |
18256408 |
T |
|
| Q |
220 |
acagatattggattttgctttgtttaaaagtgattttccaacagagttgattactgca |
277 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
18256407 |
acagatattggattacgctttgtttgaaagcgattttccaacgaagttgattactgca |
18256350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 7260304 - 7260393
Alignment:
| Q |
64 |
tgctggttttgtttcctctgccaacactgtttacatcaaaacactttacaaaggtgatgttatggtttttccacaaggattgttgcattt |
153 |
Q |
| |
|
|||||| |||||||| || || ||||||||||| ||||| ||| | | |||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
7260304 |
tgctggatttgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgcattt |
7260393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 7271025 - 7271078
Alignment:
| Q |
116 |
ggtgatgttatggtttttccacaaggattgttgcatttccaaattaacagtggt |
169 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||| |||||||||| |||| |
|
|
| T |
7271025 |
ggtgatcttatggtttttccacaagggatgttgcattttcaaattaacactggt |
7271078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 7282986 - 7283039
Alignment:
| Q |
116 |
ggtgatgttatggtttttccacaaggattgttgcatttccaaattaacagtggt |
169 |
Q |
| |
|
|||||| |||||||||||||||| || |||||||||| |||||||||| |||| |
|
|
| T |
7282986 |
ggtgatcttatggtttttccacaggggatgttgcattttcaaattaacactggt |
7283039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University