View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18913_low_18 (Length: 204)
Name: NF18913_low_18
Description: NF18913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18913_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 17917377 - 17917205
Alignment:
| Q |
18 |
tgatgttctgaccaccacatctagatctcctacttacctgtttcatcatcctattgaactgtcttccaagtaaaactaaattctctaagaaattctcatc |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17917377 |
tgatgttctgaccaccacctctagatctcctacttacctgtttcatcatcctattgaactgtcttccaagtaaaactaaattctctgagaaattctcatc |
17917278 |
T |
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| Q |
118 |
atctgcaatgtctccatatgcctcttcttcagtagtatttgctgcaaaagcaatgccttttcctttcttctca |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17917277 |
atctgcaatgtctccatatgcctcttcttcagtagtatttgctgcaaaagcaatgccttttcctttcttctca |
17917205 |
T |
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Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 48798824 - 48798653
Alignment:
| Q |
18 |
tgatgttctgaccaccacatctagatctcctacttacctgtttcatcatcctattgaactgtcttccaagtaaaactaaattctctaagaaattctcatc |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| |||||| ||||| |
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| T |
48798824 |
tgatgttctgaccaccacctctagatctcctacttacctgtttcatcatcatattgaactgcctttcaagtaaaactaaattctctgagaaataatcatc |
48798725 |
T |
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| Q |
118 |
atctgcaatgtctccatatgcctcttcttcagtagtatttgctgcaaaagcaatgccttttcctttcttctc |
189 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48798724 |
atctacaatgtctccatatgcctcttcttcagtagtatttgctgcaaaagcaatgccttttcctttcttctc |
48798653 |
T |
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