View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18913_low_5 (Length: 450)
Name: NF18913_low_5
Description: NF18913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18913_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 5203944 - 5204374
Alignment:
| Q |
1 |
atgagtgttttaagcaactattcaaaattatggacattggacatgaattttaaaaatctaatttgtgaaaagcaacaattttttgctcccaacaaaacaa |
100 |
Q |
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| T |
5203944 |
atgagtgttttaagcaactattcaaaattatggacattggacatgaattttaaaaatctaatttgtgaaaagcaacaattttttgctcccaacaaaacaa |
5204043 |
T |
|
| Q |
101 |
agtgtatatttagtgcttttcgtgcataagaaatgcttaccaagttactagtatttttccatttttgctatactaaacatggcatattcttgccttattc |
200 |
Q |
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| T |
5204044 |
agtgtatatttagtgcttttcgtgcataagaaatgcttaccaagttactagtatttttccatttttgcagtactaaacatggcatattcttgccttattc |
5204143 |
T |
|
| Q |
201 |
agttgttccttaatcacacttaacaccagtgacagtagaacaagtcattctatataaataataaattttcagtcatgaaatgagaaatcttgaggttcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5204144 |
agttgttccttaatcacacttaacaccagtgacagtagaacaagtcattctatataaataataaattttcagtcatgaaatgagaaatcttgaggttcca |
5204243 |
T |
|
| Q |
301 |
acggttactgcatgtagcttcattctggttgatggttctactcgaattagatttttccactaattttatatgaccgtttatttaaaatatcataagcttc |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5204244 |
ac-gttactgcatgtagcttcattctggttgatggttctactcgaattagatttttccactaattttatatgaccgtttatttaaaatatcataagcttc |
5204342 |
T |
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| Q |
401 |
tttatttattcatttagatgtcttctagtaat |
432 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5204343 |
tttatttattcatttagatgtcttctagtaat |
5204374 |
T |
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