View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18913_low_6 (Length: 417)

Name: NF18913_low_6
Description: NF18913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18913_low_6
NF18913_low_6
[»] chr3 (10 HSPs)
chr3 (234-415)||(4840360-4840541)
chr3 (18-123)||(4837428-4837533)
chr3 (18-123)||(4826532-4826634)
chr3 (85-123)||(4841959-4841997)
chr3 (85-123)||(4852608-4852646)
chr3 (85-123)||(4856579-4856617)
chr3 (85-123)||(4878314-4878352)
chr3 (205-233)||(4837187-4837215)
chr3 (85-117)||(4842873-4842905)
chr3 (85-117)||(4868569-4868601)
[»] chr6 (2 HSPs)
chr6 (231-415)||(14360772-14360956)
chr6 (231-415)||(13069608-13069792)
[»] chr8 (1 HSPs)
chr8 (231-415)||(28157353-28157537)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 234 - 415
Target Start/End: Complemental strand, 4840541 - 4840360
Alignment:
Q  234 tccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccgtctcatctccactcagaaattcttctcaatagaaccctaacccatcatctc 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4840541 tccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctc 4840442  T
Q  334 atacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgctttttcttctcactcg 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4840441 atacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgcttttccttctcactcg 4840360  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 4837533 - 4837428
Alignment:
Q  18 aaggatagctactgatcatcaataactagcaaatactacatggtacctatgagtgtaacattgttgaatttagtaaatgacttatattgaccataaactc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4837533 aaggatagctactgatcatcaataactagcaaatactacatggtacctatgagtgtagcattgttgaatttagtaaatgacttatattgaccataaactc 4837434  T
Q  118 acattg 123  Q
    ||||||    
T  4837433 acattg 4837428  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 4826634 - 4826532
Alignment:
Q  18 aaggatagctactgatcatcaataactagcaaatactacatggtacctatgagtgtaacattgttgaatttagtaaatgacttatattgaccataaactc 117  Q
    |||||||| ||||||||||||| || ||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  4826634 aaggataggtactgatcatcaacaagtagcaaatac---atggtacctatgagtgtaacattcttgaatttagtaaatgacttagattgaccataaactc 4826538  T
Q  118 acattg 123  Q
    ||||||    
T  4826537 acattg 4826532  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 4841997 - 4841959
Alignment:
Q  85 atttagtaaatgacttatattgaccataaactcacattg 123  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  4841997 atttagtaaataacttagattgaccataaactcacattg 4841959  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 4852646 - 4852608
Alignment:
Q  85 atttagtaaatgacttatattgaccataaactcacattg 123  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  4852646 atttagtaaatgacttagatcgaccataaactcacattg 4852608  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 4856617 - 4856579
Alignment:
Q  85 atttagtaaatgacttatattgaccataaactcacattg 123  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  4856617 atttagtacatgacttagattgaccataaactcacattg 4856579  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 4878352 - 4878314
Alignment:
Q  85 atttagtaaatgacttatattgaccataaactcacattg 123  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  4878352 atttagtacatgacttagattgaccataaactcacattg 4878314  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 4837215 - 4837187
Alignment:
Q  205 gcataagtattcatgcatgctttttgtag 233  Q
    |||||||||||||||||||||||||||||    
T  4837215 gcataagtattcatgcatgctttttgtag 4837187  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 4842905 - 4842873
Alignment:
Q  85 atttagtaaatgacttatattgaccataaactc 117  Q
    ||||||||||||||||| |||||||||||||||    
T  4842905 atttagtaaatgacttagattgaccataaactc 4842873  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 4868601 - 4868569
Alignment:
Q  85 atttagtaaatgacttatattgaccataaactc 117  Q
    ||||||||||||||||| |||||||||||||||    
T  4868601 atttagtaaatgacttagattgaccataaactc 4868569  T

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Target: chr6 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 231 - 415
Target Start/End: Complemental strand, 14360956 - 14360772
Alignment:
Q  231 tagtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccgtctcatctccactcagaaattcttctcaatagaaccctaacccatcat 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  14360956 tagtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcat 14360857  T
Q  331 ctcatacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgctttttcttctcactcg 415  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||    
T  14360856 ctcatacaaattcattcactgcaccctttgacgaaactgacgaactaatagaagtcgttttctgcacgcttttccttctcactcg 14360772  T

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Target: chr6; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 231 - 415
Target Start/End: Complemental strand, 13069792 - 13069608
Alignment:
Q  231 tagtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccgtctcatctccactcagaaattcttctcaatagaaccctaacccatcat 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  13069792 tagtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcat 13069693  T
Q  331 ctcatacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgctttttcttctcactcg 415  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  13069692 ctcatacgaattcattcactgcaccctttgatgaaactgtcgaactaatagaagtcgttttctgcacgcttttccttctcactcg 13069608  T

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Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 231 - 415
Target Start/End: Original strand, 28157353 - 28157537
Alignment:
Q  231 tagtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccgtctcatctccactcagaaattcttctcaatagaaccctaacccatcat 330  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  28157353 tagtccgaacccttcaaaccatatgtcatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcat 28157452  T
Q  331 ctcatacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgctttttcttctcactcg 415  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  28157453 ctcatacgaattcattcactgcaccctttgatgaaactgtcgaactaatagaagtcgttttctgcacgcttttccttctcactcg 28157537  T

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