View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18913_low_8 (Length: 372)
Name: NF18913_low_8
Description: NF18913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18913_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 33262778 - 33262428
Alignment:
| Q |
18 |
ggcacctcaatcattt-acaattccatatcattataaagtcttttattgagtaaatagcggaggaaaattactaaaatatgcattttttgttatcaatgt |
116 |
Q |
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| T |
33262778 |
ggcacgtcaatcattttacaactccacatcattataaagtcttttattgagtaaatagcggaggaaaattactaaaatatgcattttttgttatcaatgt |
33262679 |
T |
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| Q |
117 |
gaagttttttacacgatcaattaattaaaatatttgacttttatcataagtatctctaaagtcacacgtatgattgattgtgtttgttgacagaaaaaat |
216 |
Q |
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| T |
33262678 |
gaagttttttacacgatcaattaattaaaatatttgacttttatcataactatctctaaagtcacacatatgattgattgtgtttgttgacagaaaaaac |
33262579 |
T |
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| Q |
217 |
tatatatctcataatatatcaaaattaaactcaattaataaaagatgatgcctaagatacctttaaaaaattgtgggtataatttacctaacaactaatc |
316 |
Q |
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| T |
33262578 |
tatatatctcataatatatcaaaattaaactcaatcaataaaa-atgatacctaagatacctttgaaaaattgtgggtataatttacgtaacaactaatc |
33262480 |
T |
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| Q |
317 |
aaaatttgacacataagtaaatttgcattaggtaccaaaaaactaactttcac |
369 |
Q |
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| T |
33262479 |
aaaatttgccacataagtaaatttgca-tgggtaccaaaaaactaactttcac |
33262428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 10231911 - 10231853
Alignment:
| Q |
140 |
attaaaat-atttgacttttatcataagtatctctaaagtcacacgtatgattgattgt |
197 |
Q |
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| T |
10231911 |
attaaaatcatttgacttttatcataactatttctaaaatcacacatatgattgattgt |
10231853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 5747799 - 5747747
Alignment:
| Q |
144 |
aaatatttgacttttatcataagtatctctaaagtcacacgtatgattgattg |
196 |
Q |
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|||||||||||||| ||||||| ||| |||| || ||||| |||||||||||| |
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| T |
5747799 |
aaatatttgactttaatcataactatgtctatagccacacatatgattgattg |
5747747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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