View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18913_low_9 (Length: 359)

Name: NF18913_low_9
Description: NF18913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18913_low_9
NF18913_low_9
[»] chr2 (7 HSPs)
chr2 (243-359)||(18246110-18246226)
chr2 (111-181)||(18246288-18246358)
chr2 (259-359)||(18253214-18253315)
chr2 (259-359)||(18256253-18256354)
chr2 (111-169)||(18256136-18256194)
chr2 (50-99)||(18246355-18246403)
chr2 (122-166)||(18253408-18253452)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 243 - 359
Target Start/End: Complemental strand, 18246226 - 18246110
Alignment:
Q  243 ctaatcctcaagattaattcctcattctttcatgagtaacatcatagttttaaccactacctccgagaacacccttaagcttcttcactacagcagcatc 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18246226 ctaatcctcaagattaattcctcattctttcatgagtaacatcatagttttaaccactacctccaagaacacccttaagcttcttcactacagcagcatc 18246127  T
Q  343 aataaaagtagttgcag 359  Q
    |||||||||||||||||    
T  18246126 aataaaagtagttgcag 18246110  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 18246358 - 18246288
Alignment:
Q  111 caaatattcaagaaaatacaacacatacatttattcatctcatgtcacaaatttctcaagttacattcctt 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18246358 caaatattcaagaaaatacaacacatacatttattcatctcatgtcacaaatttctcaagttacattcctt 18246288  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 18253315 - 18253214
Alignment:
Q  259 attcctcattctttcat--gagtaacatcatagttttaaccactacctccgagaacacccttaagcttcttcactacagcagcatcaataaaagtagttg 356  Q
    |||||||||||||||||  || |||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  18253315 attcctcattctttcatatgaataacatcatagttt-aaccactacctccaagaacactcttaagcttcttcactacagcaggatcaataaaagtagttg 18253217  T
Q  357 cag 359  Q
    |||    
T  18253216 cag 18253214  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 259 - 359
Target Start/End: Original strand, 18256253 - 18256354
Alignment:
Q  259 attcctcattctttcat--gagtaacatcatagttttaaccactacctccgagaacacccttaagcttcttcactacagcagcatcaataaaagtagttg 356  Q
    |||||||| ||||||||  || |||||||||| ||| |||||| |||||| |||| |||||||||||||||||||||||||| |||||||||||||||||    
T  18256253 attcctcactctttcatatgaataacatcataattt-aaccacgacctccaagaatacccttaagcttcttcactacagcaggatcaataaaagtagttg 18256351  T
Q  357 cag 359  Q
    |||    
T  18256352 cag 18256354  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 18256136 - 18256194
Alignment:
Q  111 caaatattcaagaaaatacaacacatacatttattcatctcatgtcacaaatttctcaa 169  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18256136 caaatattcaagaaaataaaacacatacatttattcatctcatgtcacaaatttctcaa 18256194  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 18246403 - 18246355
Alignment:
Q  50 ttttatccattaagtaaactgtgtttgccagtgcaagcaaagtgcacaaa 99  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  18246403 ttttatccattaagtaaactgagtttggcagtgcaagc-aagtgcacaaa 18246355  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 18253452 - 18253408
Alignment:
Q  122 gaaaatacaacacatacatttattcatctcatgtcacaaatttct 166  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||    
T  18253452 gaaaatacaacatgtacgtttattcatctcatgtcacaaatttct 18253408  T

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