View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18914_high_4 (Length: 607)
Name: NF18914_high_4
Description: NF18914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18914_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 72 - 591
Target Start/End: Complemental strand, 954676 - 954152
Alignment:
| Q |
72 |
atgaaggtctatggttttttggtcactgttgcaatgtgagtgagtgagtgagagagccttaaattattaattaaaagagtttcataaactactaataaac |
171 |
Q |
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| T |
954676 |
atgaaggtctatggttttttggtcactgttgcaatgtgagtgagtgag----agagccttaaattattaattaaaagagtttcataaactactaataaac |
954581 |
T |
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| Q |
172 |
ggttcatacaacgctccatcatacaactcatacacattttgctcttatggtaaaataaacaaggtaccttatattaatgatgataggataccacacacaa |
271 |
Q |
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| T |
954580 |
ggttcatacaacgctccatcatacaactcatacacattttgctcttatggtaaaataaacaaggtaccttatattaatgatgataggataccacacacaa |
954481 |
T |
|
| Q |
272 |
ataagcaattatgatagaatattatattatgcaactaaacattgatgttgatatcatactttatttaagtttcttctacaatttttatgttacctacttt |
371 |
Q |
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| T |
954480 |
ataagcaattatgatagaatattatattatgcaactaaacattgatgttgatatcatactttatttaagtttcttctacaatttttatgttacctacttt |
954381 |
T |
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| Q |
372 |
gacacaaaaaattcctccaatnnnnnnnnnnnnntcgtgaatgagttcat---------gaaatcacttggataccttcattgaagatgttctaagtgca |
462 |
Q |
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| T |
954380 |
gacacaaaaaattcctccaataaaaaagaaaaaatcgtgaatgagttcattcttctatagaaatcacttggatatcttcattggagatgttctaagtgca |
954281 |
T |
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| Q |
463 |
tatttagatcgaagtgagttcggtagaattatgttgtcgtgatttaatcaactactctaccaaccnnnnnnnncttaattattaggtagaaaagtcttat |
562 |
Q |
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| T |
954280 |
tatttggatcgaagtgagttcaatagaattatgttgtcgtgatttaatcaactactctaccaaccaaaaaaaacttatttattaggtagaaaagtcttat |
954181 |
T |
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| Q |
563 |
agtttaagtactattgaacatttgtatct |
591 |
Q |
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| T |
954180 |
agtttaagtattattgaacatttgtatct |
954152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 954809 - 954740
Alignment:
| Q |
7 |
gtgagaagaaccgattcaacttttgtttgtgcatgctatttagaaacatatatagtggggagctcatgaa |
76 |
Q |
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| T |
954809 |
gtgacaagaaccgattcaacttttgtttgtgcatgctatttagaaacatatatagtggggaggtcatgaa |
954740 |
T |
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