View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18914_high_5 (Length: 524)
Name: NF18914_high_5
Description: NF18914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18914_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 168 - 507
Target Start/End: Complemental strand, 55070136 - 55069800
Alignment:
| Q |
168 |
ccacagcaactaatctcagatacactacaaacttaatattaatatagtttcttagcagaaaagaatatcatgtcatatgcaaagtaaaagagaaaaagat |
267 |
Q |
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| T |
55070136 |
ccacagcaactaatcccagatacactacaaacttaatattaatatagtttctaagcagaaaagaatatcatgtcatatgcaaagtaaaagagaaaaagat |
55070037 |
T |
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| Q |
268 |
atgatatattcttacgtatataggttaatgtgttcctcaggggtgaaattaggttcgggtaaaccttcaagaatgttgaggagtttggtgatacctttct |
367 |
Q |
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| T |
55070036 |
atgatatattcttacgtatataggttaatgtgttcctcaggagtgaaattaggttcgggtaaaccttcaagaatgttgaggagtttggtgatacctttct |
55069937 |
T |
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| Q |
368 |
gcatagtctcctatccttcttctaagttgataaattctctcatcgtcatgcttattgatgaatgaaccttgacagaagaaccctaatttggaacgaacgg |
467 |
Q |
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| T |
55069936 |
gaatagtctccaatccttcttctaagttgataaattctctcatcgtcatgcttattgatgaatgaaccttgacagaagaaccctaatttggaactaacgg |
55069837 |
T |
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| Q |
468 |
gtttgtacttttattatagtttctttttctactctgttgt |
507 |
Q |
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| T |
55069836 |
gtttgtactt---ttatagtttctttttctactctgttgt |
55069800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 55070289 - 55070194
Alignment:
| Q |
15 |
tattgagtttggtggatattgggtctaacacatccttaaaaaaccggcgtaaagattgatagtctttataaactctttcaggccttatctttatcc |
110 |
Q |
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| T |
55070289 |
tattgagtttggtggatattgggtctaacacatccttacaaaaccggcgtaaagattgatagtctttataaactctttcaggccttatctttatcc |
55070194 |
T |
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