View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18914_low_15 (Length: 227)
Name: NF18914_low_15
Description: NF18914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18914_low_15 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 954901 - 955127
Alignment:
| Q |
1 |
ttgccatcatcattcaagcatcttttatttgccttataaagaggaagactcagtttgtgaagaaaagcaaaacatgataacataaacattagggtgaacc |
100 |
Q |
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| T |
954901 |
ttgccatcatcattcaagcatcttttgtttgccttataaagaggaagactcagtttgtgaagaaaagcaaaacatgataacataaacattagggtgaacc |
955000 |
T |
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| Q |
101 |
aaagcaaatatcaccaatagtaacatacaaatgaaaaggaatccctttctttttgtgacttcaatccaaagccatccctttcaccctttttctccttcct |
200 |
Q |
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| T |
955001 |
aaagcaaatatcaccaatagtaacatacaaatgaaaaggaatccctttctttttgtgacttcaatccaaagccatccctttcaccctttttctccttcct |
955100 |
T |
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| Q |
201 |
caaaacccacatataaaataaaatact |
227 |
Q |
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| T |
955101 |
caaaacccacatataaaataaaatact |
955127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 1400373 - 1400307
Alignment:
| Q |
125 |
atacaaatgaaaaggaatccctttctt-tttgtgacttcaatccaaagccatccctttcaccctttt |
190 |
Q |
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| T |
1400373 |
atacaaatgaaaaggaatccttttcttgtttgtggtttcaatccgaagccatacctttcaccctttt |
1400307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 1404085 - 1404010
Alignment:
| Q |
116 |
aatagtaacatacaaatgaaaaggaatccctttctt-tttgtgacttcaatccaaagccatccctttcaccctttt |
190 |
Q |
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| T |
1404085 |
aatagtaaaatacaaatgaaaaggaatctttttcttgttggtggtttcaatccgaagccatacctttcaccctttt |
1404010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 45809753 - 45809845
Alignment:
| Q |
125 |
atacaaatgaaaaggaatccctttctttttgtgacttcaatccaaagccatccctttcaccctttttctccttcctcaaaacccacatataaa |
217 |
Q |
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||||| |||||||||| || ||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
45809753 |
atacagatgaaaaggagtctctttcttgttgtggtttcaatccaaagccatgtctttcacccattttctccttcctcaaaacccacatataaa |
45809845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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