View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18914_low_17 (Length: 212)

Name: NF18914_low_17
Description: NF18914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18914_low_17
NF18914_low_17
[»] chr7 (4 HSPs)
chr7 (14-193)||(32562523-32562702)
chr7 (14-76)||(32562150-32562212)
chr7 (69-193)||(5459397-5459519)
chr7 (27-60)||(19650499-19650532)
[»] chr8 (4 HSPs)
chr8 (30-193)||(12843127-12843288)
chr8 (146-185)||(24502648-24502687)
chr8 (133-193)||(10516817-10516878)
chr8 (28-60)||(15177576-15177608)
[»] chr1 (1 HSPs)
chr1 (70-193)||(34488205-34488327)
[»] chr4 (4 HSPs)
chr4 (30-96)||(17743691-17743757)
chr4 (150-193)||(6116092-6116135)
chr4 (134-193)||(17651280-17651340)
chr4 (153-193)||(17743599-17743639)
[»] chr5 (1 HSPs)
chr5 (71-185)||(25954549-25954661)
[»] chr6 (1 HSPs)
chr6 (75-170)||(33546283-33546375)
[»] chr2 (1 HSPs)
chr2 (31-96)||(18114829-18114894)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 32562523 - 32562702
Alignment:
Q  14 tgagatgaacatgttttgaaggaagcaagttctgatggacacatcaacaatataagtgactctgactagttttgtcttcttttgaagaaatgtcgcttcc 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  32562523 tgagatgaacatgttttgaaggaagcaagttatgatggacacatcaacaatataggtggctctgactagttttgtcttcttttgaagaaatgtcgcttcc 32562622  T
Q  114 aaagttatactaatagtattgtttgtcttctttaatcatgtgcagaaacaaacaaagaactttaatggcaaagagaatgt 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32562623 aaagttatactaatagtattgtttgtcttctttaatcatgtgcagaaacaaacaaagaactttaatgacaaagagaatgt 32562702  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 32562150 - 32562212
Alignment:
Q  14 tgagatgaacatgttttgaaggaagcaagttctgatggacacatcaacaatataagtgactct 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  32562150 tgagatgaacatgttttgaaggaagcaagttctgatggacacatcaacaatataggtggctct 32562212  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 193
Target Start/End: Original strand, 5459397 - 5459519
Alignment:
Q  69 gtgactctgactagttttgtcttcttttgaagaaatgtcgcttccaaagttatactaatagtattgtttgtcttctt-taatcatgtgcagaaacaaaca 167  Q
    |||||||| || | ||||||||||||||| ||||| ||||||| |||| ||   || |||||||||||| |||| || | | || ||||| |||||||||    
T  5459397 gtgactctcaccaattttgtcttcttttggagaaacgtcgctttcaaaatt---ctgatagtattgtttatctttttctgaccacgtgcaaaaacaaaca 5459493  T
Q  168 aagaactttaatggcaaagagaatgt 193  Q
    ||||| || | |||||||||||||||    
T  5459494 aagaaattcagtggcaaagagaatgt 5459519  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 19650532 - 19650499
Alignment:
Q  27 ttttgaaggaagcaagttctgatggacacatcaa 60  Q
    |||||||| |||||||||||||||||||||||||    
T  19650532 ttttgaagaaagcaagttctgatggacacatcaa 19650499  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 12843288 - 12843127
Alignment:
Q  30 tgaaggaagcaagttctgatggacacatcaacaatataagtgactctgactagttttgtcttcttttgaagaaatgtcgcttccaaagttatactaatag 129  Q
    ||||| || ||||| ||||  |||||||||||||| |  |||||| |||| |||||||||||||| ||||| ||  |||||| |||||||   || ||||    
T  12843288 tgaagaaatcaagtactgaaagacacatcaacaatttgggtgactttgaccagttttgtcttcttctgaagcaacatcgctttcaaagtt---ctgatag 12843192  T
Q  130 tattgtttgtcttctt-taatcatgtgcagaaacaaacaaagaactttaatggcaaagagaatgt 193  Q
    ||||| |||||||||| | | ||| |||| ||||||||||||||||||||||||||| |||||||    
T  12843191 tattgcttgtcttcttctgaccatatgcaaaaacaaacaaagaactttaatggcaaatagaatgt 12843127  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 24502648 - 24502687
Alignment:
Q  146 taatcatgtgcagaaacaaacaaagaactttaatggcaaa 185  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  24502648 taatcatgtgcagaaacaaacaaagaactttaatgacaaa 24502687  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 10516817 - 10516878
Alignment:
Q  133 tgtttgtcttctt-taatcatgtgcagaaacaaacaaagaactttaatggcaaagagaatgt 193  Q
    ||||||||||||| | | || |||||||| |||||| ||||||| |||||||||||||||||    
T  10516817 tgtttgtcttcttctgaccacgtgcagaagcaaacatagaacttcaatggcaaagagaatgt 10516878  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 15177576 - 15177608
Alignment:
Q  28 tttgaaggaagcaagttctgatggacacatcaa 60  Q
    ||||| |||||||||||||||||||||||||||    
T  15177576 tttgatggaagcaagttctgatggacacatcaa 15177608  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 34488327 - 34488205
Alignment:
Q  70 tgactctgactagttttgtcttcttttgaagaaatgtcgcttccaaagttatactaatagtattgtttgtcttcttta--atcatgtgcagaaacaaaca 167  Q
    |||||||||| |||||||||||||| ||||| || |||| || ||||||    || ||||||||||||||||| |||   |  | |||||||||||||||    
T  34488327 tgactctgaccagttttgtcttcttatgaaggaacgtcgttttcaaagtg---ctgatagtattgtttgtcttttttttgacgacgtgcagaaacaaaca 34488231  T
Q  168 aagaactttaatggcaaagagaatgt 193  Q
    |||||||| |||| ||||||||||||    
T  34488230 aagaacttcaatgacaaagagaatgt 34488205  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 17743757 - 17743691
Alignment:
Q  30 tgaaggaagcaagttctgatggacacatcaacaatataagtgactctgactagttttgtcttctttt 96  Q
    ||||||||||||||| ||| |||||||||| |||| |  ||||||||||| | ||||||||||||||    
T  17743757 tgaaggaagcaagttttgaaggacacatcagcaatttgggtgactctgaccaattttgtcttctttt 17743691  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 6116135 - 6116092
Alignment:
Q  150 catgtgcagaaacaaacaaagaactttaatggcaaagagaatgt 193  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||    
T  6116135 catgtgcataaacaaacaaagaacttcaatagcaaagagaatgt 6116092  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 17651280 - 17651340
Alignment:
Q  134 gtttgtcttctt-taatcatgtgcagaaacaaacaaagaactttaatggcaaagagaatgt 193  Q
    |||||||||||| ||| || |||||||||||| || |||| |||||| |||||||||||||    
T  17651280 gtttgtcttcttctaaccacgtgcagaaacaagcagagaaatttaatagcaaagagaatgt 17651340  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 17743639 - 17743599
Alignment:
Q  153 gtgcagaaacaaacaaagaactttaatggcaaagagaatgt 193  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  17743639 gtgcagaaacaaacaaagaagttcaatgacaaagagaatgt 17743599  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 25954549 - 25954661
Alignment:
Q  71 gactctgactagttttgtcttcttttgaagaaatgtcgcttccaaagttatactaatagtattgtttgtcttctt-taatcatgtgcagaaacaaacaaa 169  Q
    |||| |||| |||||||||||||| | |||||||||||||| |||| |||   | || ||||||||||||||||| | |   |||||||||| |||||||    
T  25954549 gactatgaccagttttgtcttcttctaaagaaatgtcgctttcaaaatta---tgattgtattgtttgtcttcttatgactttgtgcagaaataaacaaa 25954645  T
Q  170 gaactttaatggcaaa 185  Q
    |||||| || ||||||    
T  25954646 gaacttcaaaggcaaa 25954661  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 33546375 - 33546283
Alignment:
Q  75 ctgactagttttgtcttcttttgaagaaatgtcgcttccaaagttatactaatagtattgtttgtcttctt-taatcatgtgcagaaacaaacaaag 170  Q
    |||||||||||| |||| ||||||||| | ||||| | | ||||||| |    |||||||||||||||||| | | |||||||||||||||||||||    
T  33546375 ctgactagttttttctttttttgaagagacgtcgcattccaagttatgc----agtattgtttgtcttcttctgaccatgtgcagaaacaaacaaag 33546283  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 18114894 - 18114829
Alignment:
Q  31 gaaggaagcaagttctgatggacacatcaacaatataagtgactctgactagttttgtcttctttt 96  Q
    |||||||||||  ||||| |||||| ||| || | |||| ||||||| ||||||||||||||||||    
T  18114894 gaaggaagcaatatctgaaggacacgtcagcattctaagagactctgcctagttttgtcttctttt 18114829  T

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