View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18914_low_2 (Length: 740)
Name: NF18914_low_2
Description: NF18914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18914_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 88 - 724
Target Start/End: Original strand, 39224655 - 39225290
Alignment:
| Q |
88 |
taccaactatagttttannnnnnngaacaggtccaactctagctaataaatagttaaacaaaatcttcaaaattttcaaataacacaaactagctagtta |
187 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39224655 |
taccaactatagttttatttttttgaacaggtccaactctagctaataaatagttaaacaaaatcttcaaaattctcaaataacacaaactagctagtta |
39224754 |
T |
|
| Q |
188 |
ggaaaaattaacacctagccaacatgaacacatacatgcaagtcacaccttattctttatttcttctttctcttatttataataatttccttgatgactc |
287 |
Q |
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|||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39224755 |
ggaaaa-ttaacacctagccaacatgaacacatagatacaagtcacaccttattctttatttcttctttctcttatttataataatttccttgatgactc |
39224853 |
T |
|
| Q |
288 |
actcattacacttgaaatatatttggttgctttacttgtcctagcatttcaaccacttctctcatggttggtcgttccacactttgttcctcaacacaac |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39224854 |
actcattacacttgaaatatatttggttgctttacttgtcctagcatttcaaccacttctctcatggttggtcgttccacactttgttcctcaacacaac |
39224953 |
T |
|
| Q |
388 |
acatagctacaaagaataactgcattgcttcatctaaaggaatattgttatgtaacctcccatcaagaatcttcaccacactttctttgttccaatcagt |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39224954 |
acatagctacaaagaataactgcattgcttcatctaaaggaatattgttatgtaacctcccatcaagaatcttcaccacactttctttgttccaatcagt |
39225053 |
T |
|
| Q |
488 |
ttttaacttggtccattgaacaatatccattccttcttcaccaaaatctcccactggccttctccctgttaaaagttctagtagcaccaccccaaagctg |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39225054 |
ttttaacttggtccattgaacaatatccattccttcttcaccaaaatctcccactggccttctccctgttaaaagttctagtagcaccaccccaaagctg |
39225153 |
T |
|
| Q |
588 |
tatacatcacttttctcatccactttcaatgtgtatgcatattctgtaacataacataattcagaatcagtttacataattgcttcctttcacaatttaa |
687 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39225154 |
tatacatcacttttctcatccactttcaatgtgtatgcatattctgtaacataacataattcagaatcagtttacataattgcttcctttcacaatttaa |
39225253 |
T |
|
| Q |
688 |
actataatatctatatgcttttggttattgtgcatat |
724 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
39225254 |
actataatatctatatgcttttggttattgtgcatat |
39225290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 633
Target Start/End: Complemental strand, 4979833 - 4979782
Alignment:
| Q |
582 |
aagctgtatacatcacttttctcatccactttcaatgtgtatgcatattctg |
633 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||||||| || ||||| |||| |
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| T |
4979833 |
aagctgtatacatcgcttttctcatcaactttcaatgtataggcatactctg |
4979782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 299 - 633
Target Start/End: Complemental strand, 16737357 - 16737026
Alignment:
| Q |
299 |
ttgaaatatatttggttgctttacttgtcctagcatttcaaccacttctctcatggttggtcgttccacactttgttcctcaacacaacacatagctaca |
398 |
Q |
| |
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||||||||| | | ||| |||| ||||| | ||||| ||||||||||| ||||||||||||| |||||||| ||||| | |||||| |||| || ||| |
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| T |
16737357 |
ttgaaatatgtattgttactttgcttgtgcaagcatctcaaccacttccctcatggttggtctctccacactatgttcatgaacacataacattgccaca |
16737258 |
T |
|
| Q |
399 |
aagaataactgcattgcttcatctaaaggaatattgttatgtaacctcccatcaagaatcttcaccacactttctttgttccaatcagtttttaacttgg |
498 |
Q |
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|| || | || ||||||||| ||||||||| ||| | ||| |||| ||||||| ||||||| ||| | ||||||||||||| |||||| | |||| |
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| T |
16737257 |
aaaaacacttgttttgcttcatgtaaaggaat-ttg--aggtagcctctcatcaaggatcttcatcaccatatctttgttccaattagttttcattttgg |
16737161 |
T |
|
| Q |
499 |
tccattgaacaatatccattccttcttcaccaaaatctcccactggccttctccctgttaaaagttctagtagcaccaccccaaagctgtatacatcact |
598 |
Q |
| |
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||||||||||||| || | |||||||| ||||||| |||||||||||| ||||||| | |||||||| ||||| || ||||| || || |||||||| |
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|
| T |
16737160 |
tccattgaacaatgtctaaaccttcttcctcaaaatcccccactggccttttccctgtgatgagttctagcagcacaactccaaaactatacacatcact |
16737061 |
T |
|
| Q |
599 |
tttctcatccactttcaatgtgtatgcatattctg |
633 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| |
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|
| T |
16737060 |
tttctcatcaactttcaatgtgtatgcatattctg |
16737026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 525 - 633
Target Start/End: Original strand, 40403165 - 40403273
Alignment:
| Q |
525 |
tcaccaaaatctcccactggccttctccctgttaaaagttctagtagcaccaccccaaagctgtatacatcacttttctcatccactttcaatgtgtatg |
624 |
Q |
| |
|
|||||||| ||||| ||||| |||| |||| || ||| ||||| || ||||| || |||||||| || || ||||| || || |||||||||||||||| |
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| T |
40403165 |
tcaccaaattctccaactggttttcttcctgctacaagctctagaagtaccacaccgaagctgtagacgtcgcttttttcgtcgactttcaatgtgtatg |
40403264 |
T |
|
| Q |
625 |
catattctg |
633 |
Q |
| |
|
|||| |||| |
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|
| T |
40403265 |
catactctg |
40403273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 634
Target Start/End: Complemental strand, 26736808 - 26736743
Alignment:
| Q |
569 |
tagcaccaccccaaagctgtatacatcacttttctcatccactttcaatgtgtatgcatattctgt |
634 |
Q |
| |
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||||||||| || || || || ||||||||||| ||||||||||| | ||||||||||||||||| |
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|
| T |
26736808 |
tagcaccactccgaaactatacacatcacttttttcatccactttgagagtgtatgcatattctgt |
26736743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 635
Target Start/End: Original strand, 17825004 - 17825063
Alignment:
| Q |
576 |
accccaaagctgtatacatcacttttctcatccactttcaatgtgtatgcatattctgta |
635 |
Q |
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|||||||| || || ||||||| |||||||| ||||| || ||||||||||||||||||| |
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| T |
17825004 |
accccaaaactatacacatcacatttctcattcacttgcattgtgtatgcatattctgta |
17825063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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