View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18914_low_3 (Length: 708)
Name: NF18914_low_3
Description: NF18914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18914_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 15 - 690
Target Start/End: Original strand, 44373751 - 44374423
Alignment:
| Q |
15 |
cacagagggagagtttggtcttcaggtgcttcttttatgggctttccagctaattccttcgtcaactgcatatggaaatagaacggaatagcaatgttaa |
114 |
Q |
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| T |
44373751 |
cacagaggaagagtttggtcttcaggtgcttcttttatgggctttccagctaattccttcgtcaactgcatatggaaatagaacggaatagcaatgttaa |
44373850 |
T |
|
| Q |
115 |
gcaatgagtcgatattttctcgtattagcaaagtagtaattatttttatttttcttcttcttcaaacaattcagatattgtatgatgatgacattgacat |
214 |
Q |
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| T |
44373851 |
gcaatgagtcaatattttctcgtattagcaaagtagtaattatttttatttttcttcttcttcaaacaattcagatattgtatga---tgacattgacat |
44373947 |
T |
|
| Q |
215 |
agtcttgtggtaatgccttatgaattttgaaatgcttgaaattccaggattttgtgaaaattgctttcaactgacccaagaaattagtgcttgataagca |
314 |
Q |
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| T |
44373948 |
agtcttgtggtaatgccttatgaattttgaaatgcttgaaattccaggatattgtgaaaattgctttcaactgacccaagaaattagtgcttgataagca |
44374047 |
T |
|
| Q |
315 |
ttagagttgaagtaagtataagaactcccagcatcaaaaacagcaagaagatttccaaaaccagtcctctttcctccaagaacaagttcagcagccccag |
414 |
Q |
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| T |
44374048 |
ttagagttgaagtaagtataagaactcccagcatcaaaaacagcaagaagatttccaaaaccagtcctctttcctccaagaacaagttcagcagccccag |
44374147 |
T |
|
| Q |
415 |
ctgagtaatgtttgctgagaaaaatcttaaattagtatatagaaatatgaatatcattacaattaatgtggatttgacttgttaagatcttcttactaat |
514 |
Q |
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| T |
44374148 |
ctgagtaatgtttgctgagaaaaatcttaaattagtttatagaaatatgaatatcattacgattaatgtggatttgacttgttaagatctacttactaat |
44374247 |
T |
|
| Q |
515 |
ctctcgacgacattggagtccaagccaatcgagaagaatcataaacatctccaaagaagatgtatcctcctccttgtgcactcaaacagtgtccaacgac |
614 |
Q |
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| T |
44374248 |
ctctcgacgacattggagtccaagccaatcgagaagaatcataaacatctccaaagaagatgtatcctcctccttgtgcactcaaacagtgtccaacgac |
44374347 |
T |
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| Q |
615 |
atttctcaccaaaccctgaccattcagttgtgatatcaagctggatttgcccctgccaaggccaagcattccatct |
690 |
Q |
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| T |
44374348 |
atttctcaccaaaccctgaccattcagttgtgatatcaagctggatttgcccctgccaaggccaagcattccatct |
44374423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 526 - 690
Target Start/End: Original strand, 39497338 - 39497502
Alignment:
| Q |
526 |
attggagtccaagccaatcgagaagaatcataaacatctccaaagaagatgtatcctcctccttgtgcactcaaacagtgtccaacgacatttctcacca |
625 |
Q |
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|||||||||||| || |||||||||||||||||||| ||||||||| ||||||||||||||| | | || ||||| ||||| | ||||||| ||||| |
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| T |
39497338 |
attggagtccaactcattcgagaagaatcataaacatttccaaagaaaatgtatcctcctcctcgcgagcttaaacaatgtcccatcacatttcgcacca |
39497437 |
T |
|
| Q |
626 |
aaccctgaccattcagttgtgatatcaagctggatttgcccctgccaaggccaagcattccatct |
690 |
Q |
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||||||| | |||||| |||||||||||||||| || ||||| ||||| ||||| ||||||||| |
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| T |
39497438 |
aaccctggctattcagctgtgatatcaagctggcctttccccttccaagaccaagtattccatct |
39497502 |
T |
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