View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18914_low_6 (Length: 476)
Name: NF18914_low_6
Description: NF18914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18914_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 8067819 - 8067361
Alignment:
| Q |
1 |
agagtaacctaacgattacctattgagagttggtcatattcatcaggattgatctgatgtttatatcatgatagttgcttgatatatgttttcttatatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8067819 |
agagtaacctaacgattacctattgagagttggtcatattcatcaggattggtctgatgtttatatcatgatagttgcttgatatatgtttgcttatatg |
8067720 |
T |
|
| Q |
101 |
aaatcatgataatgttatgtgtatcctgtgtttggttcgatacatgtttgcaatacctagaagagtaatatggaaattataagtagggttttatgatgtt |
200 |
Q |
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| T |
8067719 |
aaatcatgataatgttatgtgtatcctgtgtttggtttgatacatgtttgcaatacctagaagggtaatatggaaattataagcagggttttatgatgtt |
8067620 |
T |
|
| Q |
201 |
ttggttattaccaaaattatattttagttgactaattctcaatattatatgaattcagttcaaagatacaaaaaattgtactttagttgactgattctca |
300 |
Q |
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| T |
8067619 |
ttggttattaccaaaattatattttagttgactaattctca--attatatgaattcagttcaaagatacaaaaaattgtactttagttgactgattctca |
8067522 |
T |
|
| Q |
301 |
atataatataatttcggtcaatacgaagaaactccattatcatgtttgtgaggttgatttggcccaaattttgtgaggttgggactatgagattaaaga- |
399 |
Q |
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| T |
8067521 |
atataatataatttcggtcaatacgaagaaactccattatcatgtttgtgaggttgatttggcccaaattttgtgaggttgggactatgagattaaagat |
8067422 |
T |
|
| Q |
400 |
ttggcttttaagagagtttgaattcttttgatacttgaaggtggaaccggatacatatctt |
460 |
Q |
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| T |
8067421 |
ttggcttttaagagagtttgaattcttttgatacttgaaggtggaaccggatacatatctt |
8067361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 139 - 255
Target Start/End: Original strand, 8080486 - 8080605
Alignment:
| Q |
139 |
gatacatgtttgcaatacctagaagagtaatatggaaattataagtagggttttatga---tgttttggttattaccaaaattatattttagttgactaa |
235 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| | | | |
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| T |
8080486 |
gatatatgtttgcaatacctagaatggtaatatggaaattataagtagggttttatgatgttgttttggttattaccaaaattatactttagttaattga |
8080585 |
T |
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| Q |
236 |
ttctcaatattatatgaatt |
255 |
Q |
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|||||||||| ||||||||| |
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| T |
8080586 |
ttctcaatataatatgaatt |
8080605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 145 - 259
Target Start/End: Original strand, 8071558 - 8071675
Alignment:
| Q |
145 |
tgtttgcaatacctagaagagtaatatggaaattataagtagggttttatga---tgttttggttattaccaaaattatattttagttgactaattctca |
241 |
Q |
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||||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||| ||||||||||| ||| ||| |
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| T |
8071558 |
tgtttgcaataccaagaagggtaatatggaaattataaggagggttttatgatgttgttttggttactaccaaagctatagtttagttgactgattttca |
8071657 |
T |
|
| Q |
242 |
atattatatgaattcagt |
259 |
Q |
| |
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|||| | ||||||||||| |
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| T |
8071658 |
atataacatgaattcagt |
8071675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 8080084 - 8080170
Alignment:
| Q |
1 |
agagtaacctaacgattacctattgagagttggtcatattcatcaggattgatctgatgtttatatcatgatagttgcttgatatatg |
88 |
Q |
| |
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|||||||||||| ||||||||||||| |||||||||| |||| || |||||||||||||||||||| |||||||||| || ||||||| |
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| T |
8080084 |
agagtaacctaatgattacctattgaaagttggtcattttcaaca-gattgatctgatgtttatatgatgatagttggttaatatatg |
8080170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 8080239 - 8080289
Alignment:
| Q |
86 |
atgttttcttatatgaaatcatgataatgttatgtgtatcctgtgtttggt |
136 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
8080239 |
atgtttgcttatatgaaatcatgataatgctatgtgtatcctgagtttggt |
8080289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 8080563 - 8080630
Alignment:
| Q |
272 |
aaaattgtactttagttgactgattctcaatataatataatttcggtcaatacgaagaaactccatta |
339 |
Q |
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|||||| |||||||||| | |||||||||||||||||| | || || |||||||||||||||||||| |
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| T |
8080563 |
aaaattatactttagttaattgattctcaatataatatgaattttgttaatacgaagaaactccatta |
8080630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 8078078 - 8078027
Alignment:
| Q |
376 |
aggttgggactatgagattaaagattggcttttaagagagtttgaattcttt |
427 |
Q |
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|||||||||||| ||||||||||| | ||||| |||||||||||||||||| |
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| T |
8078078 |
aggttgggactaagagattaaagaccgacttttgagagagtttgaattcttt |
8078027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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