View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18914_low_8 (Length: 401)

Name: NF18914_low_8
Description: NF18914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18914_low_8
NF18914_low_8
[»] chr5 (4 HSPs)
chr5 (1-269)||(28402160-28402426)
chr5 (1-266)||(19931116-19931379)
chr5 (1-269)||(19133918-19134184)
chr5 (297-381)||(28402780-28402864)
[»] chr4 (3 HSPs)
chr4 (81-262)||(32531514-32531693)
chr4 (285-381)||(32842119-32842220)
chr4 (285-381)||(32835993-32836094)
[»] chr6 (2 HSPs)
chr6 (57-150)||(30759645-30759738)
chr6 (82-146)||(30749394-30749458)
[»] chr1 (1 HSPs)
chr1 (170-238)||(5291822-5291891)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 28402160 - 28402426
Alignment:
Q  1 acttgtgatcgagaactttttacagaactcgacaaatcttattcttatgttatcagagttgcgaatggagcaaaaattacagtagaaggcattggaacag 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28402160 acttgtgatcgagaactttttacacaactcgacaaatcttattcttatgtgatcagagttgcgaatggagcaaaaattacagtagaaggcattggaacag 28402259  T
Q  101 ttgtatttaagaattactcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaagtgttcatgaattgttgaag 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  28402260 ttgtatttaagaatcactcaggttcgaaactagttttgaatgttt--tatatgttcctcaaatttctgaaaatctcttaagtgttcctgaattgttgaag 28402357  T
Q  201 aatggctacaaagtgttatttgaacatgaaaattgtgtgatttatgaccaaaacaacaaagaggtgttc 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28402358 aatggctacaaagtgttatttgaacatgaaaattgtgtgatttatgaccaaaacaacaaagaggtgttc 28402426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 19931116 - 19931379
Alignment:
Q  1 acttgtgatcgagaactttttacagaactcgacaaatcttattcttatgttatcagagttgcgaatggagcaaaaattacagtagaaggcattggaacag 100  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| ||| || | |||||||||||||||||| ||||||| |||||||||||||||||    
T  19931116 acttgtgatcgagatttttttacagaactcgacaaatcttattcttctgtgatgacagttgcgaatggagcaaatattacagcagaaggcattggaacag 19931215  T
Q  101 ttgtatttaagaattactcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaagtgttcatgaattgttgaag 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  19931216 ttgtatttaagaatcactcaggttcgaaactagttttgaatgttt--tatatgttcctcaaatttctgaaaatcttttaagtgttcctgaattgttgaat 19931313  T
Q  201 aatggctacaaagtgttatttgaacatgaaaattgtgtgatttatgaccaaaacaacaaagaggtg 266  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19931314 aatggctacaaagtgttatttgaacatgaaaattgtgtgattaatgaccaaaacaacaaagaggtg 19931379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 19134184 - 19133918
Alignment:
Q  1 acttgtgatcgagaactttttacagaactcgacaaatcttattcttatgttatcagagttgcgaatggagcaaaaattacagtagaaggcattggaacag 100  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| ||| || |||||||||||||||||| ||||||||  ||||||||||||||||     
T  19134184 acttgtgatcgagaagtttttaccgaactcgacaaatcttattcttctgtgattagagttgcgaatggagcagaaattacatcagaaggcattggaacaa 19134085  T
Q  101 ttgtatttaagaattactcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaagtgttcatgaattgttgaag 200  Q
    | |||||||||||| | |||||||| ||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||| | |||||||||||    
T  19134084 tagtatttaagaatcattcaggttccaaactagttttgaatgtttt--atatgttcctcaaatttccgaaaatcttttaagtgttcctcaattgttgaag 19133987  T
Q  201 aatggctacaaagtgttatttgaacatgaaaattgtgtgatttatgaccaaaacaacaaagaggtgttc 269  Q
    ||||| ||||||||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||    
T  19133986 aatggttacaaagtgttatttgaacatgaaagttgtatgattaatgaccaaaacaacgaagaggtgttc 19133918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 297 - 381
Target Start/End: Original strand, 28402780 - 28402864
Alignment:
Q  297 tcctacgaggattataccataaacaacaatcagaactcttcattaataatgttgcatagaaacatataaataagggacatacatc 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28402780 tcctacgaggattataccataaacaacaatcagaactcttcattaataatgttgcatagaaacatataaataagggacatacatc 28402864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 262
Target Start/End: Original strand, 32531514 - 32531693
Alignment:
Q  81 agtagaaggcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgttttatatatgttcctcaaatttctgaaaatcttttaa 180  Q
    ||||||||||||||| |||||| || |||| | | |||||||||  |||| | ||| |||||||||||||  | |||| || ||  | ||| ||||||||    
T  32531514 agtagaaggcattgggacagttttagttaaaagtcactcaggttataaacaaatttcgaatgttttatat--gctcctaaacttaatcaaagtcttttaa 32531611  T
Q  181 gtgttcatgaattgttgaagaatggctacaaagtgttatttgaacatgaaaattgtgtgatttatgaccaaaacaacaaaga 262  Q
    |||||| | | ||||||| ||| |||||||||||||| ||||||||||| || ||||||||| | || |||||||| |||||    
T  32531612 gtgttcctcagttgttgacgaaaggctacaaagtgttgtttgaacatgagaagtgtgtgattaaagatcaaaacaataaaga 32531693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 32842220 - 32842119
Alignment:
Q  285 atagtgatcatgtcctacgaggattataccata-----aacaacaatcagaactcttcattaataatgttgcatagaaacatataaataagggacataca 379  Q
    |||||||||||||||||||| |||||||||| |     |||||||||||| || | | ||||||||||||||| ||||||||| |||| ||||| |||||    
T  32842220 atagtgatcatgtcctacgacgattataccaaacctgaaacaacaatcagcacacataattaataatgttgcacagaaacatacaaatcagggatataca 32842121  T
Q  380 tc 381  Q
    ||    
T  32842120 tc 32842119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 32836094 - 32835993
Alignment:
Q  285 atagtgatcatgtcctacgaggattataccata-----aacaacaatcagaactcttcattaataatgttgcatagaaacatataaataagggacataca 379  Q
    |||||||||||||||||||| |||||||||| |     |||||||||||| || |   ||||||||||||||| ||||||||| |||| ||||| |||||    
T  32836094 atagtgatcatgtcctacgacgattataccaaacctgaaacaacaatcagcacacaaaattaataatgttgcacagaaacatacaaatcagggatataca 32835995  T
Q  380 tc 381  Q
    ||    
T  32835994 tc 32835993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 30759738 - 30759645
Alignment:
Q  57 agttgcgaatggagcaaaaattacagtagaaggcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgttttatat 150  Q
    ||||||||||||||||   |||   |||||||||||||||||| ||  | |||  ||| ||||||||| ||||||| |||||||||||||||||    
T  30759738 agttgcgaatggagcacctattgaggtagaaggcattggaacaattacaattagaaatcactcaggtttgaaactaattttgaatgttttatat 30759645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 30749458 - 30749394
Alignment:
Q  82 gtagaaggcattggaacagttgtatttaagaattactcaggttcgaaactagttttgaatgtttt 146  Q
    ||||||||| |||||||||||  | ||||  || ||||||||| ||||||| |||||||||||||    
T  30749458 gtagaaggctttggaacagttacaattaaacatcactcaggtttgaaactaattttgaatgtttt 30749394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 5291822 - 5291891
Alignment:
Q  170 aaatcttttaagtgttcatgaattgttgaagaatggctacaaagtgttatttg-aacatgaaaattgtgt 238  Q
    ||||||||||||||||  | || ||||| | ||||||||||||||| |||||| ||||| ||||||||||    
T  5291822 aaatcttttaagtgttgttcaaatgttgcaaaatggctacaaagtgctatttgaaacataaaaattgtgt 5291891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University