View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18915_high_10 (Length: 296)
Name: NF18915_high_10
Description: NF18915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18915_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 3014472 - 3014757
Alignment:
| Q |
1 |
tgttgatttgtatgtattatagcgatgttgttgcgtaatatctgcttaattctttctattcatgtttttgtatttcatatttcagtggtgaaggaatccc |
100 |
Q |
| |
|
||||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3014472 |
tgttgatttgtatgttttacagcgttgttgtcgcgtaatatctgcttaattctttctattcatgtttttgtatttcatatttcagcggtgaaggaatccc |
3014571 |
T |
|
| Q |
101 |
ggacatgttatttctattgtttaagtggactcaaaaaaccatgattcccaaatttacctacaatcatgaatatgtgcaggttagccttttttccactagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3014572 |
ggacatgttatttctattgtttaagtggactcaaaaaaccatgattcccaaatttacctacaatcatgaatatgtgcaggttagccttttttcaactagt |
3014671 |
T |
|
| Q |
201 |
tattattatagttcaatgtttctttgtcacagatctcataacatatcttgttattgcagagtcttcgacctagtcgtttatctgtg |
286 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3014672 |
tattattatagttcaatgtttcttcgtcgcagatctcataacatatcttgttattgcagagtcttcgacctagtcgtttatctgtg |
3014757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 183042 - 183119
Alignment:
| Q |
59 |
ttcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaa |
136 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
183042 |
ttcatgttttagtatttgatatttcaatggtgaaggaatcccagacatgttatttctattgtttcagtggacccaaaa |
183119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 591338 - 591250
Alignment:
| Q |
57 |
tattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgat |
145 |
Q |
| |
|
|||| ||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
591338 |
tattgatgttctagtatttgatatttcagtggtgaaggaatcacggacatgttatttctattgtttggttggacccaaaagaccatgat |
591250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 40672172 - 40672025
Alignment:
| Q |
71 |
tatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgattcccaaatttacctacaatcatgaa |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||| |||| ||| |||||||||| ||| || |
|
|
| T |
40672172 |
tatttcatatttcagtggtgaaggaatcccggatatgttatttctattgtttaagtggatccaatacaccattattcacaagtttacctacagtcaacaa |
40672073 |
T |
|
| Q |
171 |
tatgtgcaggttagccttttttccactagttattattatagttcaatg |
218 |
Q |
| |
|
|||||||||||||| ||||| | | | |||||||||| ||||||| |
|
|
| T |
40672072 |
gctgtgcaggttagcccttttttccccacttattattattattcaatg |
40672025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 44606401 - 44606488
Alignment:
| Q |
57 |
tattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatga |
144 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||| ||||||| |
|
|
| T |
44606401 |
tattgatgttttagtatttaatatttcagtggtgaaggaatcccggatatgttattactattagttaagtggacccaaaagaccatga |
44606488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 44627892 - 44627979
Alignment:
| Q |
57 |
tattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatga |
144 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||| || ||||||| ||||| ||||||| |
|
|
| T |
44627892 |
tattgatgttttagtatttaatatttcagtggtgaaggaatcccggatatgttattactattagttcagtggacccaaaagaccatga |
44627979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University