View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18915_high_15 (Length: 245)
Name: NF18915_high_15
Description: NF18915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18915_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 2918953 - 2918719
Alignment:
| Q |
1 |
atagctgccactataactaacaccaatgcttattcatgtaccttctgttattcataactaagcaatgattacaaaactcaaaaggaataatggttaataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2918953 |
atagctgccactataactaacaccaatgcttattcatgtaccttctgttattcataactaagcaatgattacaaaactcaaaaggaataatggttaataa |
2918854 |
T |
|
| Q |
101 |
tttcaggaatccccatgagttgcatatgttgttgaaagtcaaactaatcctaattaacattgcaatgacctaatcatactctaaacctaattgttaggcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2918853 |
tttcaggaatccccatgagttgcatatgttgttgaaagtcaaactaatcctaattaacattgcaatgacctaatcatactctaaacctaattgttaggcg |
2918754 |
T |
|
| Q |
201 |
ccaaactaggataaccggttgatctttaacctttg |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
2918753 |
ccaaactaggataaccggttgatctttaacctttg |
2918719 |
T |
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Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 31412857 - 31412673
Alignment:
| Q |
41 |
ccttctgttattcataactaagcaatgattacaaaactcaaaaggaataatggttaataatttcaggaatccccatgagttgcatatg-ttgttgaaagt |
139 |
Q |
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| T |
31412857 |
ccttctgttattcataactaagcaatgattaca-----------gagtaatggttattaatttcaggaatccccatgagttgcatatggttgttcaaagt |
31412769 |
T |
|
| Q |
140 |
caaactaatcctaattaacattgcaatgacctaatcatactctaaacctaattgttaggcgccaaactaggataaccggttgatctttaacctttg |
235 |
Q |
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| T |
31412768 |
caaactaatcctaattaacattgcaatgatctaatcataccctaaacctaattgctaggcgccaaactacgataaccgtttgatctttaacctttg |
31412673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 35858064 - 35858161
Alignment:
| Q |
137 |
agtcaaactaatcctaattaacattgcaatgacctaatcatactctaaacctaattgttaggcgccaaactaggataaccggttgatctttaacctttg |
235 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| || ||||| |||||||||| |||||||||||||||||||| | |||||||||||||| |
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| T |
35858064 |
agtcaaactaatcctaattaacattgcaattacctaatcaaaccctaaatctaattgtta-gcgccaaactaggataaccgttgaatctttaacctttg |
35858161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 38612038 - 38611946
Alignment:
| Q |
144 |
ctaatcctaattaacattgcaatgacctaatcatactctaaacctaatt-gttaggcgccaaactaggataaccggttgatctttaacctttg |
235 |
Q |
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|
|||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||| ||||| | | ||||||||||||||| |
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| T |
38612038 |
ctaatcctaattaacattgcaatgacctaaccataccctaaacctaattatttaggcgtcaaactatgataaatgttggatctttaacctttg |
38611946 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 2952918 - 2953010
Alignment:
| Q |
144 |
ctaatcctaattaacattgcaatgacctaatcatactctaaacctaatt-gttaggcgccaaactaggataaccggttgatctttaacctttg |
235 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| |||||||||||| ||||||||||||||| ||||| | | |||| |||||||||| |
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| T |
2952918 |
ctaatcctaattaacattgcaatgaccgaaacataccctaaacctaattatttaggcgccaaactatgataaatgttggatcattaacctttg |
2953010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 45463894 - 45463970
Alignment:
| Q |
159 |
attgcaatgacctaatcatactctaaacctaattgttaggcgccaaactaggataaccggttgatctttaacctttg |
235 |
Q |
| |
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|||| ||||||||||||| || ||||| ||||||| |||||||||||||| |||||||| | ||||||||| ||||| |
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| T |
45463894 |
attgtaatgacctaatcaaaccctaaagctaattgctaggcgccaaactatgataaccgttggatctttaatctttg |
45463970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 36142199 - 36142167
Alignment:
| Q |
144 |
ctaatcctaattaacattgcaatgacctaatca |
176 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
36142199 |
ctaatcctaattaacattgcaatgacataatca |
36142167 |
T |
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