View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18915_high_17 (Length: 243)
Name: NF18915_high_17
Description: NF18915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18915_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 48777545 - 48777584
Alignment:
| Q |
155 |
cacaagctaaaatgatgtatattaaaaacaccggcaataa |
194 |
Q |
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| T |
48777545 |
cacaagctaaaatgatgtatattaaaaacaccggcaataa |
48777584 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 23027162 - 23027201
Alignment:
| Q |
155 |
cacaagctaaaatgatgtatattaaaaacaccggcaataa |
194 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |
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| T |
23027162 |
cacaagctaaaatgatgtatattaaaaacaccgacaataa |
23027201 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 12699522 - 12699483
Alignment:
| Q |
155 |
cacaagctaaaatgatgtatattaaaaacaccggcaataa |
194 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||| |
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| T |
12699522 |
cacaaactaaaatgatgtatattaaaaacaccggctataa |
12699483 |
T |
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