View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18915_high_19 (Length: 237)
Name: NF18915_high_19
Description: NF18915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18915_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 42878472 - 42878635
Alignment:
| Q |
18 |
aagcattgaaatatgacgcaaacatgtgggtaccaatttaa-cacgtttcaattttgacttgaagaatttgttttaattggtgacattttagattcaaan |
116 |
Q |
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| T |
42878472 |
aagcattgaaatatgacgcaaacatgtgggtaccaatttaaacacgtttcaattttgacttgaagaatttgttttaattggtgacattttagattcaaat |
42878571 |
T |
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| Q |
117 |
nnnnnncttattttcaaagtcaggattaagaataaacatgttgatacccttgtctattttcagt |
180 |
Q |
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| T |
42878572 |
ttttttcttattttcaaggtcaggattaagaataaagatgttgatacccttgtctgttttcagt |
42878635 |
T |
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