View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18915_high_2 (Length: 665)
Name: NF18915_high_2
Description: NF18915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18915_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 51 - 646
Target Start/End: Complemental strand, 181434 - 180839
Alignment:
| Q |
51 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
181434 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctgcggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
181335 |
T |
|
| Q |
151 |
caagaattacaatgaannnnnnnattttctaagttcctaaaactgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgag |
250 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
181334 |
caagaattacaatgaaattttttattttctaagttcctaaaattgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgag |
181235 |
T |
|
| Q |
251 |
catgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgatattgagacatataatgaaaggtgtagagatcactgttacttgaacc |
350 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
181234 |
catgccatatagaaggtgaggcagagcaagtggaagcaagagcagtgggttgatattgagacatataatgaaaggtgtagagatcactgttactggaacc |
181135 |
T |
|
| Q |
351 |
gcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtgaaattcaagatatgtattgttagacttgcagaatttcttaacagat |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
181134 |
gcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtgcaattcaagatatgtattgttagacttgcagaatttcttaacatat |
181035 |
T |
|
| Q |
451 |
atgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagtaatattgggggtagggagggtaatagagccaacatgtgaaattttca |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
181034 |
atgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagtaatatttggggtagggagggtaatagagccaacatgtgaaatattca |
180935 |
T |
|
| Q |
551 |
aacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttgatgttatacgatgactggctc |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
180934 |
aacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttgatgttatatgatgactggctc |
180839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 649
Target Start/End: Complemental strand, 1701911 - 1701263
Alignment:
| Q |
1 |
aaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagctacgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1701911 |
aaatgatcaacaaacacaagataatatttgtaaccatgaactgaagtgataggagagggtccccaaacatcagaaaataacagttcaagaggagctgtgg |
1701812 |
T |
|
| Q |
101 |
ttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatgaannnnnnnattttctaagttcctaaaactgccaca |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
1701811 |
ttttgatagaagaaacagaaaaaggaagcttatgacttttattaatatggcaagaattacaatgaaattttttattttctaaattcctaaaattgccaca |
1701712 |
T |
|
| Q |
201 |
actagacatcattagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggt |
300 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
1701711 |
agtagacatcatttgtgcaagaactctgaaagagggatgaccgaaacgagcatgccataaagaaggggaggcggagcaggtggaagcaagagcagtgggt |
1701612 |
T |
|
| Q |
301 |
tgatattgagacatataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtag |
400 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1701611 |
tgatattgagacttaggatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcgcccccgtgacctgatcctttacacagaaaaaggtag |
1701512 |
T |
|
| Q |
401 |
ggtgaaattcaagatatgtattgttagacttgcagaatttcttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1701511 |
ggtgaaattcaagatatgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaa |
1701412 |
T |
|
| Q |
501 |
agtaatattgggggtagggagggtaatagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggag |
600 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
1701411 |
agtagtattgggggtagggagggtaatagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttctggaccgtcatattcggag |
1701312 |
T |
|
| Q |
601 |
tgaagctgcatattgttcagatttgatgttatacgatgactggctcctg |
649 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1701311 |
tgcagctgcatattgttcagatttgatgttatatgatgactggctcctg |
1701263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 527 - 620
Target Start/End: Complemental strand, 5400124 - 5400031
Alignment:
| Q |
527 |
tagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcag |
620 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || || | |||||||||||||| |
|
|
| T |
5400124 |
tagagccaacatgagaaatttttaaacctgtaccatcaccaatttgaacttcctcgggaccatcatattctgaatggatgtgcatattgttcag |
5400031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 5400647 - 5400484
Alignment:
| Q |
1 |
aaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagctacgg |
100 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||| || || ||||| || ||||||||||||||||| || | ||||||| |||| | | |
|
|
| T |
5400647 |
aaatggtcaacaaagacaagataatacctgtaaccattaatggacgttataggggatggtccccaaacatcagagaaaatgagttcaaatggagagaaag |
5400548 |
T |
|
| Q |
101 |
ttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatg |
164 |
Q |
| |
|
||| || ||||| | ||||||||||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
5400547 |
tttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcaggaattacaatg |
5400484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 532 - 625
Target Start/End: Original strand, 26593053 - 26593146
Alignment:
| Q |
532 |
ccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttg |
625 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
26593053 |
ccaacatgggaaattttcaaacctgtaccatcaccaatttgcacttcttctgggccatcatattcagagtgaatgtgcatattattcagatttg |
26593146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 26592533 - 26592600
Alignment:
| Q |
7 |
tcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcaga |
74 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||| || || ||||| || ||||||||||||||||| |
|
|
| T |
26592533 |
tcaacaaacacaagatagtatctataaccattaatggatgttataggggatggtccccaaacatcaga |
26592600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 527 - 620
Target Start/End: Complemental strand, 3541121 - 3541028
Alignment:
| Q |
527 |
tagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcag |
620 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||||| || |||||||||||||| || || | |||||||||||||| |
|
|
| T |
3541121 |
tagagccaacatgagaaatttttaaacctgtaccatcaccaatttgaacttcctctggaccatcatattctgaatggatgtgcatattgttcag |
3541028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 3541622 - 3541459
Alignment:
| Q |
1 |
aaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagctacgg |
100 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||| | || || ||||| || ||||||||||||||||| || | ||||||| |||| | | |
|
|
| T |
3541622 |
aaatggtcaacaaagacaagataatacttgtaaccattgatggacgttataggggatggtccccaaacatcagagaaaatgagttcaaatggagagaaag |
3541523 |
T |
|
| Q |
101 |
ttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatg |
164 |
Q |
| |
|
||| || ||||| | ||||||||||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
3541522 |
tttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcaggaattacaatg |
3541459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University