View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18915_high_5 (Length: 425)
Name: NF18915_high_5
Description: NF18915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18915_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 7 - 407
Target Start/End: Complemental strand, 43817580 - 43817180
Alignment:
| Q |
7 |
ggagcacagacattagttggtaattggcatccaatgtatgcattaggccaatgtcaacgcgatcttgatccgacacaatgcaacatttgtttcacccaag |
106 |
Q |
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| T |
43817580 |
ggagcacaaacattagttggtaattggcatccaatgtatgcattaggccaatgtcaacgcgatcttgatccgacacaatgcaacatttgtttcacccaag |
43817481 |
T |
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| Q |
107 |
caagacaattgttatcgaggtgcataccaaaggtttcaggtagaatttacctcgacggttgttttcttcgttatgataactacactttctttgatgagag |
206 |
Q |
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| T |
43817480 |
caagacaattgttatcgaggtgcataccaaaggtttcaggtagaatttacctcgacggttgttttcttcgttatgataactacactttctttgatgagag |
43817381 |
T |
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| Q |
207 |
tgtagatttatcgcgtgatacgaaaatatgtgggtccacggaaaagggagagacggtggatgcgaaacatgttgagacggtgattttgaaagtgaccaag |
306 |
Q |
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| T |
43817380 |
tgtagatttatcgcgtgatacgaaaatatgtgggtccacggaaaagggagagacggtggatgcgaaacatgttgagacggtgattttgaaagtgaccaag |
43817281 |
T |
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| Q |
307 |
ggtgccggggaacataaattttctgtggatggggaaggtggtgtgtttgcaatggcgcagtgttgggagacgttggataaattgagctgtcaaaaatgtt |
406 |
Q |
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| T |
43817280 |
ggtgccggggaacataaattttctgtggatggggaaggtggtgcgtttgcaatggcgcagtgttgggagacgttggataaattgagctgtcaaaaatgtt |
43817181 |
T |
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| Q |
407 |
t |
407 |
Q |
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| T |
43817180 |
t |
43817180 |
T |
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