View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18915_high_7 (Length: 358)
Name: NF18915_high_7
Description: NF18915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18915_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 3014048 - 3014373
Alignment:
| Q |
18 |
ctccccatttttcagcacattttcctgctgttgatgctgaaagacgtatgctggttcttgataacacaccattcaggggcttatatctatgtgatattgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3014048 |
ctccccatttttcagcacattttcctgctggtgatgctgaaagacgtatgctggttcttgataacacaccattcaggggcttatatctatgtgatattgc |
3014147 |
T |
|
| Q |
118 |
tattttggttgttgacattatgcatgatgatggcttacagccacatactatagacttacttgatctattaaaaatcaccaacaaacaattcatccttgcc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3014148 |
tattttggttgttgacattatgcatgatgatggcttacacccacatactatagacttactcgatctattaaaactcaccaacaaacaattcatccttgcc |
3014247 |
T |
|
| Q |
218 |
ttgaataagatcgacatgattcatgactggaaaacatgtcctaatgctccatttcgtaaagcattgttgcagcagtctaaggatgttcaagatgagtttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3014248 |
ttgaataagatcgacatgattcatgactggaaaacatgtcctaatgctccttttcgtaaagcattgttgcagcagtctaaggatgttcaagatgagtttc |
3014347 |
T |
|
| Q |
318 |
ataccaggctctctaaggttgtttct |
343 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
3014348 |
ataccaggctctctaagtttgtttct |
3014373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 593650 - 593533
Alignment:
| Q |
103 |
tctatgtgatattgctattttggttgttgacattatgcatgatgatggcttacagccacatactatagacttacttgatctattaaaaatcaccaacaaa |
202 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||||||| ||||| |||||| ||| |||||||| | ||| ||||||||||||| ||||||| | |
|
|
| T |
593650 |
tctatgtgatatcgcaattttggttgtagacattatgc------atggcatacagcaacaaactatagattcactcgatctattaaaaaggaccaacaca |
593557 |
T |
|
| Q |
203 |
caattcatccttgccttgaataag |
226 |
Q |
| |
|
| |||||| ||| |||||||||| |
|
|
| T |
593556 |
gacttcatcattgtcttgaataag |
593533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 29220057 - 29220009
Alignment:
| Q |
244 |
ctggaaaacatgtcctaatgctccatttcgtaaagcattgttgcagcag |
292 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| || |||||||| |
|
|
| T |
29220057 |
ctggaaaacatgtcctaatgctccaatttgtaaagcagtgatgcagcag |
29220009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 182467 - 182507
Alignment:
| Q |
103 |
tctatgtgatattgctattttggttgttgacattatgcatg |
143 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
182467 |
tctatgtgatattgcaattttggttgtagatattatgcatg |
182507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 33 - 343
Target Start/End: Complemental strand, 40672630 - 40672323
Alignment:
| Q |
33 |
cacattttcctgctgttgatgctgaaagacgtatgctggttcttgataacacaccattcaggggcttatatctatgtgatattgctattttggttgttga |
132 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| | ||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
40672630 |
cacattttcctgctggtgatgctgaaagacgtatgctggttgttgataacgcaccaattaggggttcatatctatgtgatattgctattttggttgttga |
40672531 |
T |
|
| Q |
133 |
cattatgcatgat------gatggcttacagccacatactatagacttacttgatctattaaaaatcaccaacaaacaattcatccttgccttgaataag |
226 |
Q |
| |
|
||||||||||||| ||||||||||| ||| |||| ||| |||||||||||| ||||||||||||||||| |||||||||||| | |
|
|
| T |
40672530 |
cattatgcatgatcatgatgatggcttacaccca---------gactcactcaatctattaaaaactaccaacaaacaattcattgttgccttgaatatg |
40672440 |
T |
|
| Q |
227 |
atcgacatgattcatgactggaaaacatgtcctaatgctccatttcgtaaagcattgttgcagcagtctaaggatgttcaagatgagtttcataccaggc |
326 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
40672439 |
gtcgacatgattcatcactggaaaacatgtcccaatgctccatttcgtaaagcattgatgcagcagtctaagggtgttcaagatgactttcataccaggg |
40672340 |
T |
|
| Q |
327 |
tctctaaggttgtttct |
343 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
40672339 |
tctctaaggttgtttct |
40672323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 44627000 - 44627071
Alignment:
| Q |
244 |
ctggaaaacatgtcctaatgctccatttcgtaaagcattgttgcagcagtctaaggatgttcaagatgagtt |
315 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
44627000 |
ctggaaaacatgtcgcaatgctccaattcgtaaagcaatgacgcagcagtctaaggatgttcaaaatgagtt |
44627071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 44605015 - 44605098
Alignment:
| Q |
103 |
tctatgtgatattgctattttggttgttgacattatgcatgatgatggcttacagccacatactatagacttacttgatctattaaaaat |
192 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| |||||||| | ||| ||||||||||||| |
|
|
| T |
44605015 |
tctatgtgatattgcaattttggttgttgacattatgc------atggcttagagccacaaactatagagtcactcaatctattaaaaat |
44605098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 44626780 - 44626897
Alignment:
| Q |
103 |
tctatgtgatattgctattttggttgttgacattatgcatgatgatggcttacagccacatactatagacttacttgatctattaaaaatcaccaacaaa |
202 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||| |||||||| ||||||| |||||||| | ||| ||||||||||||| | |||| |
|
|
| T |
44626780 |
tctatgtgatattgcaattttggttgtggacattatgc------atggcttagagccacaaactatagagtcactcaatctattaaaaatgaggaacact |
44626873 |
T |
|
| Q |
203 |
caattcatccttgccttgaataag |
226 |
Q |
| |
|
|||||||| |||| ||||||||| |
|
|
| T |
44626874 |
gaattcatcgttgcattgaataag |
44626897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University