View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18915_high_9 (Length: 317)

Name: NF18915_high_9
Description: NF18915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18915_high_9
NF18915_high_9
[»] chr7 (4 HSPs)
chr7 (1-300)||(6723986-6724284)
chr7 (173-212)||(22334221-22334260)
chr7 (138-211)||(11466937-11467010)
chr7 (122-166)||(4995902-4995945)
[»] chr5 (7 HSPs)
chr5 (126-300)||(18179239-18179410)
chr5 (126-196)||(20101000-20101070)
chr5 (186-298)||(7741250-7741362)
chr5 (172-257)||(30791606-30791690)
chr5 (127-195)||(16072261-16072329)
chr5 (123-195)||(19571017-19571090)
chr5 (139-204)||(20695926-20695991)
[»] chr8 (5 HSPs)
chr8 (121-289)||(6887069-6887225)
chr8 (225-300)||(8541750-8541825)
chr8 (138-185)||(13528979-13529026)
chr8 (138-185)||(13618518-13618565)
chr8 (136-218)||(35134469-35134551)
[»] chr4 (6 HSPs)
chr4 (123-242)||(21048325-21048442)
chr4 (122-196)||(18778301-18778375)
chr4 (126-258)||(33520125-33520256)
chr4 (126-191)||(8926417-8926482)
chr4 (136-204)||(42498738-42498807)
chr4 (147-212)||(9575847-9575912)
[»] chr2 (5 HSPs)
chr2 (123-216)||(31275245-31275338)
chr2 (126-190)||(25461225-25461289)
chr2 (136-188)||(19004576-19004628)
chr2 (123-242)||(21847297-21847415)
chr2 (37-86)||(13589906-13589955)
[»] chr1 (4 HSPs)
chr1 (170-259)||(28411527-28411614)
chr1 (124-230)||(23420498-23420602)
chr1 (141-212)||(23506766-23506837)
chr1 (123-218)||(33175505-33175600)
[»] chr6 (7 HSPs)
chr6 (138-276)||(12960292-12960423)
chr6 (126-259)||(21604662-21604793)
chr6 (171-259)||(26498765-26498851)
chr6 (148-258)||(12966952-12967060)
chr6 (148-258)||(12969138-12969246)
chr6 (148-258)||(12971324-12971432)
chr6 (123-242)||(16440501-16440618)
[»] chr3 (1 HSPs)
chr3 (123-209)||(7779421-7779507)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 6723986 - 6724284
Alignment:
Q  1 cataaggttcaactactggtagatgtgtgttgcgcactatgagttgcatgtcatgtagctaagaagaattcaaaagtggtcagctagtggtggatgcgca 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6723986 cataaggttcaactactggtagatgtgtgttgcacactatgagttgcatgtcatgtagctaagaagaattcaaaagtggtcagctactggtggatgcgca 6724085  T
Q  101 atgcatgcattaagttgtgtgacaccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcgga 200  Q
    ||||||| |||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6724086 atgcatgtattaagttatgtgtcaccaaatcatacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcaga 6724185  T
Q  201 atttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagattactttgttgtgatttagaagtat 300  Q
    | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6724186 aattgttagaaat-aatagaattaaaaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagattactttgttgtaatttagaagtat 6724284  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 22334221 - 22334260
Alignment:
Q  173 attgtcattcaacttggtaattagcggaatttgttagaaa 212  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  22334221 attgtcattcaacttggtaattagctgaatttattagaaa 22334260  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 11466937 - 11467010
Alignment:
Q  138 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaa 211  Q
    ||||||||| |||||| ||||| ||||| |   ||||||||||||||||| | ||||||| |||||| ||||||    
T  11466937 aagtaataaagtagtaggttattgtctccacatggattgtcattcaacttagcaattagcagaatttattagaa 11467010  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 4995902 - 4995945
Alignment:
Q  122 acaccaaatcgtacacaagtaataaggtagtaagttatcgtctct 166  Q
    |||||||||| ||| |||||||||| |||||||||||||||||||    
T  4995902 acaccaaatcatac-caagtaataaagtagtaagttatcgtctct 4995945  T

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Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 126 - 300
Target Start/End: Complemental strand, 18179410 - 18179239
Alignment:
Q  126 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaa 225  Q
    |||||| || ||||||||||| |||||||||||| || || ||  | ||| || ||||||||||||| |||| |||||| ||||||||||| ||||||||    
T  18179410 caaatcataaacaagtaataaagtagtaagttattgtatccatatgcattatctttcaacttggtaaatagcagaatttattagaaataaa-agaattaa 18179312  T
Q  226 aaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagattactttgttgtgatttagaagtat 300  Q
    || |||||||||||||||| ||||||||||||||  || ||||||||||||||  ||||||||||| ||||||||    
T  18179311 aa-gagatgaagtggtttgcaggattttaattgt-tttcccaatgcgagattaagttgttgtgattcagaagtat 18179239  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 20101070 - 20101000
Alignment:
Q  126 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattag 196  Q
    |||||| ||| |||||||||| |||||||||||| ||||| || ||||||||| |||||||||||| ||||    
T  20101070 caaatcatactcaagtaataaagtagtaagttatagtctccataaggattgtcgttcaacttggtagttag 20101000  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 298
Target Start/End: Original strand, 7741250 - 7741362
Alignment:
Q  186 ttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagattactttgtt 285  Q
    ||||||||| ||||||||| ||||||||||  | | | ||||| ||||||||||||||  | ||||||||||||  |  ||||||||| |||| | ||||    
T  7741250 ttggtaattggcggaatttattagaaataacaaaattaaaaaacagatgaagtggtttacaagattttaattgtcttgcccaatgcgaaattagtatgtt 7741349  T
Q  286 gtgatttagaagt 298  Q
    |||||| ||||||    
T  7741350 gtgattcagaagt 7741362  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 30791690 - 30791606
Alignment:
Q  172 gattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaatt 257  Q
    ||||||| ||||| ||| ||||||||||||||| || |||||||| ||| || | || ||||||||||||||| ||| ||||||||    
T  30791690 gattgtcgttcaaattgataattagcggaatttatttgaaataaa-agattttagaaaagatgaagtggtttgcagggttttaatt 30791606  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 16072329 - 16072261
Alignment:
Q  127 aaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaatta 195  Q
    ||||||||| ||||||| || ||||||||| || ||||| |  |||||||||| |||||||||||||||    
T  16072329 aaatcgtactcaagtaagaaagtagtaagtaattgtctccacaaggattgtcagtcaacttggtaatta 16072261  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 19571090 - 19571017
Alignment:
Q  123 caccaaatcgtacacaagtaataaggtagtaagtt-atcgt-ctctatcaggattgtcattcaacttggtaatta 195  Q
    |||||||||||| |||| |||||| |||||||||| ||||| |||||  |||||||||||||||||| |||||||    
T  19571090 caccaaatcgta-acaaataataaagtagtaagtttatcgttctctacaaggattgtcattcaacttagtaatta 19571017  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 20695991 - 20695926
Alignment:
Q  139 agtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaattt 204  Q
    |||||||| |||||||||||||||||| |   |||||||| ||||||| ||||||||  |||||||    
T  20695991 agtaataaagtagtaagttatcgtctccacagggattgtcgttcaactcggtaattataggaattt 20695926  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 289
Target Start/End: Original strand, 6887069 - 6887225
Alignment:
Q  121 gacaccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaataga 220  Q
    ||||||||||| ||| |||||| |||  ||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||| ||||||||           
T  6887069 gacaccaaatcatacccaagtattaaattagtaagttatcgtctccacaaggattgtcgttcaacttggtaattagcggaatttattagaaat------- 6887161  T
Q  221 attaaaaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagattactttgttgtga 289  Q
        ||||||||||||| ||||||||||||||||||||| ||  ||||||||||||||  |||||||||    
T  6887162 ----aaaagagatgaag-ggtttgtaggattttaattgtcctgcccaatgcgagattagattgttgtga 6887225  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 8541825 - 8541750
Alignment:
Q  225 aaaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagattactttgttgtgatttagaagtat 300  Q
    |||||||||||||||||||| |||||||||||| | ||  ||||||||||||||  ||||||||||| | ||||||    
T  8541825 aaaagagatgaagtggtttgcaggattttaattattctgcccaatgcgagattaggttgttgtgattgaaaagtat 8541750  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 13528979 - 13529026
Alignment:
Q  138 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaac 185  Q
    ||||||||| |||||||||||||||||| ||  |||||||||||||||    
T  13528979 aagtaataaagtagtaagttatcgtctccatatggattgtcattcaac 13529026  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 13618518 - 13618565
Alignment:
Q  138 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaac 185  Q
    ||||||||| |||||||||||||||||| ||  |||||||||||||||    
T  13618518 aagtaataaagtagtaagttatcgtctccatatggattgtcattcaac 13618565  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 35134469 - 35134551
Alignment:
Q  136 acaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaata 218  Q
    |||||||||||  |||| |||||  ||||| || ||||||||| || |||||||||||||||  ||||| |||||| ||||||    
T  35134469 acaagtaataaaatagtgagttactgtctccataaggattgtcgtttaacttggtaattagcaaaatttattagaagtaaata 35134551  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 242
Target Start/End: Complemental strand, 21048442 - 21048325
Alignment:
Q  123 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaat 222  Q
    ||||||||||||| ||| ||||||    ||||||||||||||  |  ||||||||  ||||||||||||||||||||||||| ||||||||||| |||||    
T  21048442 caccaaatcgtacgcaaataataaaaaggtaagttatcgtcttcacaaggattgttgttcaacttggtaattagcggaatttattagaaataaa-agaat 21048344  T
Q  223 taaaaagagatgaagtggtt 242  Q
    |  |||||||||||||||||    
T  21048343 t-taaagagatgaagtggtt 21048325  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 18778375 - 18778301
Alignment:
Q  122 acaccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattag 196  Q
    ||||||||| |||| |||||||||| ||||||||||||||| || ||  |||||||| |||||||| ||||||||    
T  18778375 acaccaaattgtactcaagtaataaagtagtaagttatcgtttccatgtggattgtcgttcaactttgtaattag 18778301  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 33520256 - 33520125
Alignment:
Q  126 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaa 225  Q
    ||||||||| ||||||| ||| ||||||||||||  |||  || |  |||||| ||||||| | ||| ||| ||||||| ||| |||||||| ||||| |    
T  33520256 caaatcgtagacaagtagtaaagtagtaagttattctcttcataaaaattgtcgttcaactcgataaatagtggaatttattataaataaat-gaattta 33520158  T
Q  226 aaagagatgaagtggtttgtaggattttaattg 258  Q
    ||||||||||| ||||||  ||| |||||||||    
T  33520157 aaagagatgaaatggtttacagggttttaattg 33520125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 8926482 - 8926417
Alignment:
Q  126 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggta 191  Q
    |||||| ||| |||||||||| |||| ||||||||||||| ||  |||||||| ||||||||||||    
T  8926482 caaatcatactcaagtaataaagtagcaagttatcgtctccatagggattgtcgttcaacttggta 8926417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 42498807 - 42498738
Alignment:
Q  136 acaagtaataaggtagtaagtta-tcgtctctatcaggattgtcattcaacttggtaattagcggaattt 204  Q
    ||||||||||| ||||||||| | | || | ||| ||||||||| |||||||||||||||||||||||||    
T  42498807 acaagtaataatgtagtaagtgaattgtttttataaggattgtcgttcaacttggtaattagcggaattt 42498738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 9575912 - 9575847
Alignment:
Q  147 ggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaa 212  Q
    |||||||| || ||||||||||   ||||||| ||||||||| ||||||||||||| | |||||||    
T  9575912 ggtagtaaattgtcgtctctatagagattgtcgttcaacttgataattagcggaatatattagaaa 9575847  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 31275338 - 31275245
Alignment:
Q  123 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaa 216  Q
    |||||||||||| ||||||||||| |||||||||||||||||| || ||||||||  ||| ||||||||| |||  ||| || |||||||||||    
T  31275338 caccaaatcgtaaacaagtaataaagtagtaagttatcgtctccataaggattgttgttccacttggtaaatagaagaacttattagaaataaa 31275245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 25461289 - 25461225
Alignment:
Q  126 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggt 190  Q
    ||||| ||||||||||||||| |||||||||||||||||| |   |||||||| |||||||||||    
T  25461289 caaattgtacacaagtaataaagtagtaagttatcgtctccaaatggattgtcgttcaacttggt 25461225  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 19004576 - 19004628
Alignment:
Q  136 acaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttg 188  Q
    |||| |||||| |||||||||||||||||||||  |||||||| |||||||||    
T  19004576 acaaataataaagtagtaagttatcgtctctatatggattgtcgttcaacttg 19004628  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 242
Target Start/End: Original strand, 21847297 - 21847415
Alignment:
Q  123 caccaaatcgtacacaagtaa-taaggtagtaagttatcgtctctatca-ggattgtcattcaacttggtaattagcggaatttgttagaaataaataga 220  Q
    |||||||||||| | |||||| ||| ||| |||| |||||| ||| ||| ||||||||||||||||| |||||||| || |||| |||||||| || | |    
T  21847297 caccaaatcgtaaataagtaactaaagtactaagctatcgtatct-tcatggattgtcattcaacttagtaattagtgggatttattagaaatcaaaata 21847395  T
Q  221 attaaaaagagatgaagtggtt 242  Q
    ||  ||||||||| ||||||||    
T  21847396 at--aaaagagataaagtggtt 21847415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 13589955 - 13589906
Alignment:
Q  37 ctatgagttgcatgtcatgtagctaagaagaattcaaaagtggtcagcta 86  Q
    ||||||||||||||||  | | |||||||| |||||||||||||||||||    
T  13589955 ctatgagttgcatgtcgcgcatctaagaaggattcaaaagtggtcagcta 13589906  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 28411614 - 28411527
Alignment:
Q  170 aggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgt 259  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||| || | |||| |||||||||||||||||||||||  ||||||||||    
T  28411614 aggattgccattcaactcgttaattagcggaatttattagaaat-aacaaaatt-aaaagagatgaagtggtttgtagtgttttaattgt 28411527  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 23420498 - 23420602
Alignment:
Q  124 accaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaatt 223  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |  ||||||||| |||||||| | ||||| | |||||| ||||||   ||||||||     
T  23420498 accaaatcgta-acaagtaataaagtagtaagttatcgtctccacaaggattgtcgttcaacttagcaattaac-gaatttattagaagcgaatagaatg 23420595  T
Q  224 aaaaaga 230  Q
    |||||||    
T  23420596 aaaaaga 23420602  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 23506837 - 23506766
Alignment:
Q  141 taataaggtagtaagttatcgtctctatcag-gattgtcattcaacttggtaattagcggaatttgttagaaa 212  Q
    |||||| |||||||||||||||||||| ||| || |||| |||||||||||||||||| |||||| |||||||    
T  23506837 taataaagtagtaagttatcgtctcta-cagtgaatgtcgttcaacttggtaattagcagaatttattagaaa 23506766  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 33175505 - 33175600
Alignment:
Q  123 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaata 218  Q
    ||||||||| || |||||||||||  |||||||||||| |||| |    ||||||| |||||||| | |||||| ||||||| |||||| ||||||    
T  33175505 caccaaatcataaacaagtaataaaatagtaagttatcttctccacatagattgtcgttcaacttagcaattagaggaatttattagaagtaaata 33175600  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 12960292 - 12960423
Alignment:
Q  138 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaag 237  Q
    ||||||||| ||  ||||||| |||||| || | ||||||| ||||||||||||||||| | ||||| ||| || |||| | |||  ||||||||| |||    
T  12960292 aagtaataaagtcataagttaccgtctccataaagattgtcgttcaacttggtaattagagaaatttcttaaaagtaaaaaaaat--aaaagagataaag 12960389  T
Q  238 tggtttgtaggattttaattgtactttccaatgcgagat 276  Q
         ||||||||||||||||| ||| ||||||||||||    
T  12960390 -----tgtaggattttaattgtccttcccaatgcgagat 12960423  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 21604662 - 21604793
Alignment:
Q  126 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaa 225  Q
    |||||| ||| ||| |||||| |||||||| |||| |||  |  | |||||||  |||||| | |||||||||||||||  || |||||| |||||||||    
T  21604662 caaatcttacgcaaataataaagtagtaagctatcatctacacaaagattgtcgctcaactagataattagcggaatttactataaataa-tagaattaa 21604760  T
Q  226 aaagagatgaagtggtttgtaggattttaattgt 259  Q
    || ||||||||||| |||| |||| |||||||||    
T  21604761 aa-gagatgaagtgatttgcaggaatttaattgt 21604793  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 26498765 - 26498851
Alignment:
Q  171 ggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgt 259  Q
    |||||||| ||||||||||||||||| ||||||| |||||| |||  |||||| | || ||| ||||| |||||| || ||||||||||    
T  26498765 ggattgtcgttcaacttggtaattagaggaatttattagaagtaa--agaatttataaaagacgaagttgtttgttgggttttaattgt 26498851  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 12966952 - 12967060
Alignment:
Q  148 gtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtag 247  Q
    ||||||||||||||||||  |  ||||| |||||||||| ||||||| |||| |||| |||||| |  | |||||| | || ||||||||||||||||      
T  12966952 gtagtaagttatcgtctccgtagggattatcattcaactcggtaattggcggcatttattagaagt--agagaatttagaaaagatgaagtggtttgtga 12967049  T
Q  248 gattttaattg 258  Q
    | |||||||||    
T  12967050 ggttttaattg 12967060  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 12969138 - 12969246
Alignment:
Q  148 gtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtag 247  Q
    ||||| ||||||||||||  |  ||||| |||||||||| ||||||| ||||||||| |||||| |  | |||||| | || ||||||||||||||||      
T  12969138 gtagtcagttatcgtctccgtagggattatcattcaactcggtaattggcggaatttattagaagt--agagaatttagaaaagatgaagtggtttgtga 12969235  T
Q  248 gattttaattg 258  Q
    | |||||||||    
T  12969236 ggttttaattg 12969246  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 12971324 - 12971432
Alignment:
Q  148 gtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtag 247  Q
    ||||| ||||||||||||  |  ||||| |||||||||| ||||||| ||||||||| |||||| |  | |||||| | || ||||||||||||||||      
T  12971324 gtagtcagttatcgtctccgtagggattatcattcaactcggtaattggcggaatttattagaagt--agagaatttagaaaagatgaagtggtttgtga 12971421  T
Q  248 gattttaattg 258  Q
    | |||||||||    
T  12971422 ggttttaattg 12971432  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 242
Target Start/End: Complemental strand, 16440618 - 16440501
Alignment:
Q  123 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaat 222  Q
    ||||||||| |||| | |||| || |||||||||||||| |||||  ||||| ||  |||||||  | |||||||||||||| ||| || |||||| |||    
T  16440618 caccaaatcatacataggtaaaaaagtagtaagttatcgcctctacaaggatcgttgttcaactaagcaattagcggaatttattataagtaaataaaat 16440519  T
Q  223 taaaaagagatgaagtggtt 242  Q
      ||||||||| || |||||    
T  16440518 --aaaagagataaactggtt 16440501  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 7779421 - 7779507
Alignment:
Q  123 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttag 209  Q
    ||||||||| ||  |||||| |||| | ||||||||| ||||| || |||||||||||||||| |||||| |||| |||||| ||||    
T  7779421 caccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggattgtcattcaacatggtaaatagcagaatttattag 7779507  T

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