View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18915_low_1 (Length: 901)
Name: NF18915_low_1
Description: NF18915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18915_low_1 |
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| [»] scaffold0321 (3 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 431 - 891
Target Start/End: Original strand, 16003 - 16463
Alignment:
| Q |
431 |
ttcacttttttgaaggtacttttactgtggctgtgtttggctacactggtggtaggagattatgctccatcaccacaaaatccattcgttaacttcacac |
530 |
Q |
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| T |
16003 |
ttcactttttttaaggtacttttactgtggctgtgtttggctacactggtggttggagattatgctccatcaccacaaaatccattcgttaacttcacac |
16102 |
T |
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| Q |
531 |
acattccttcacctccacctccacatcagcaggctcctatgaagtcacctcttcctgcacctccaccgatgaagtcacctcttcctccacctccaccggc |
630 |
Q |
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| T |
16103 |
acattccttcacctccacctccacatcagcaggctcctatgaagtcacctcttcctgcacctccaccgatgaagtcacctcttcctccacctccacaggc |
16202 |
T |
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| Q |
631 |
ctctccaccggcctcaagttcattcggaggtctgggttgggctgttttggtgattggtgtcattgcagcgttctttgtgggttactgctgcagaatccgc |
730 |
Q |
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| T |
16203 |
ctctccaccggcctcaagttcattcggaggtctgggttgggctgttttggtgattggtgtcattgcagcgttctttgtgggttactgctgcagaatccgc |
16302 |
T |
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| Q |
731 |
catagtggagtcgaagcagctgaagaagagtctattgatgaaaatgatttgacataggtggatgaagtatgattataccataggcatatgcatttttcat |
830 |
Q |
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| T |
16303 |
catagtggagtcgaagcagctgaagaagagtctattgatgaaaatgatttgacataggtggatgaagtatgattataccataggcatatgcatttttcat |
16402 |
T |
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| Q |
831 |
acacatgtatttttaactagacattatcatgtgatcttccacgtcctatatctgtgctgct |
891 |
Q |
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| T |
16403 |
acacatgtatttttaactagacattatcatgtgatctttcacgtcctatatttgtactgct |
16463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 189 - 411
Target Start/End: Original strand, 15705 - 15927
Alignment:
| Q |
189 |
tgatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaatcctcttttgtcaatcactggatggatgatagaggtgaatcctc |
288 |
Q |
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| T |
15705 |
tgatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaatcctcttttgtcaatcactggatggatgatagaggtgaatcctc |
15804 |
T |
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| Q |
289 |
ttttgttggtaaacgatatagcaatgcttaacattgtttctattattctatatatagcagttctctttattattttttcgtcaaaaacaaataagaagca |
388 |
Q |
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| T |
15805 |
ttttgtcggtaaacgatatagcaatgcttaacattgtttctattattctatatatagcagttctctttattattttttcgtcaaaaacaaataagaagca |
15904 |
T |
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| Q |
389 |
aggtagataacgtttgtatataa |
411 |
Q |
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| T |
15905 |
aggtagataaagtttgtatataa |
15927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321; HSP #3
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 15497 - 15669
Alignment:
| Q |
19 |
atcaaggtgcatgataacaactatcttaaagatttcattttcctcttgttttcctctatcattagctaatttgaaatctgaaataataacgagaatcgtc |
118 |
Q |
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| T |
15497 |
atcaaggtgcatgataacaactatcttaaagatttcattttcctctggttttcctctatcattagctaatttgaaatctgaaataataacgagaatcgtc |
15596 |
T |
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| Q |
119 |
aaatgcatagtggtcttctataataggatcggggaattctgtgtcttcattttcgtggaaatatgtttcatgat |
192 |
Q |
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| T |
15597 |
aaatgcatagtggtcttctataataggatcgggg-attctgtgtcttcattttcgtggaaatatgtttcatgat |
15669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 8666548 - 8666638
Alignment:
| Q |
100 |
aataataacgagaatcgtcaaatgcatagtggtcttctataataggatcggggaattctgtgtcttcattttcgtggaaatatgtttcatgat |
192 |
Q |
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| T |
8666548 |
aataatgacgggaatcatcaaatgcatagtagtcttctataatagaat--gggaattctgtgtcttcatttttgtggaagtatattttatgat |
8666638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 8666439 - 8666501
Alignment:
| Q |
37 |
aactatcttaaagatttcattttcctcttgttttcctctatcattagctaatttgaaatctga |
99 |
Q |
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| T |
8666439 |
aactgtcttaagcatttcattctcctctttttttcctctatcattagctaatttgaaatctga |
8666501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 8666673 - 8666727
Alignment:
| Q |
189 |
tgatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaa |
244 |
Q |
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| T |
8666673 |
tgatttgtataactt-gcaagtgtttgagtgtttaatctgccagttcttgtttgaa |
8666727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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