View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18915_low_6 (Length: 394)

Name: NF18915_low_6
Description: NF18915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18915_low_6
NF18915_low_6
[»] chr7 (1 HSPs)
chr7 (20-291)||(1094353-1094624)
[»] chr2 (14 HSPs)
chr2 (126-342)||(10494067-10494283)
chr2 (171-342)||(10489995-10490167)
chr2 (62-321)||(10508708-10508955)
chr2 (69-223)||(10464589-10464743)
chr2 (62-206)||(10519481-10519625)
chr2 (90-232)||(10546735-10546874)
chr2 (250-342)||(7477421-7477513)
chr2 (128-203)||(10447857-10447932)
chr2 (123-183)||(10850304-10850364)
chr2 (123-206)||(10475884-10475967)
chr2 (123-209)||(27969047-27969133)
chr2 (123-209)||(28091454-28091540)
chr2 (123-209)||(28101686-28101772)
chr2 (127-204)||(10864127-10864204)
[»] chr5 (3 HSPs)
chr5 (123-267)||(33577954-33578092)
chr5 (123-259)||(33577404-33577534)
chr5 (345-380)||(9891758-9891793)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 1094353 - 1094624
Alignment:
Q  20 cagatggggtgcagtttacttgttcagtttcttctgacgttcttctttctagtgttgatggggtgcaggacctgtccattaatgtggagaagcaaagggt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  1094353 cagatggggtgcagtttacttgttcagtttcttctgacgttcttctttctagtgttgatggggtgcaggacctgtccattaatgtggataagcaaatggt 1094452  T
Q  120 aacatatcaacttccaagacttgtattcatcaacagtcttgactacaaggaagcagatccgtgggaagttgtagatcaggtaaacttaattagattaatg 219  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1094453 aacatatcaacttccaagaattgtattcatcaacagtcttgactacaaggaagcagatccgtgggaagttgtagatcaggtaaacttaattagattaatg 1094552  T
Q  220 gatttgaggtcattatagatcattcttatgttgtttatccaagatagcaagtggcatgtagcgccgaacccc 291  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  1094553 gatttgaggtcattatagatgattcttatgttttttatccaagatagtaagcggcatgtagcgccgaacccc 1094624  T

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Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 126 - 342
Target Start/End: Complemental strand, 10494283 - 10494067
Alignment:
Q  126 tcaacttccaagacttgtattcatcaacagtcttgactacaaggaagcagatccgtgggaagttgtagatcaggtaaacttaattagattaatggatttg 225  Q
    |||||||||||||||||| |||||||||| ||||||| | |||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10494283 tcaacttccaagacttgtgttcatcaacaatcttgaccataagagagcagatccgtgggaagttgtagatcaggtaaacttacttagattaatggatttg 10494184  T
Q  226 aggtcattatagatcattcttatgttgtttatccaagatagcaagtggcatgtagcgccgaaccccaaaaatgctatagtggtatagtagatagcgagaa 325  Q
    |||||||||||||| | | |||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  10494183 aggtcattatagatgactattatgttgttaatcctagatagcaagcggcatgtagcgccgaaccccaaaaatgctatagcggtatagtagatagcaagaa 10494084  T
Q  326 agtcactattgtcaatc 342  Q
    || ||||||||||||||    
T  10494083 agccactattgtcaatc 10494067  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 171 - 342
Target Start/End: Complemental strand, 10490167 - 10489995
Alignment:
Q  171 agcagatccgtgggaagttgtagatcaggtaaacttaattag-attaatggatttgaggtcattatagatcattcttatgttgtttatccaagatagcaa 269  Q
    |||| |||||||| ||||||||  || |||||||||| |||| ||||||||||| |||||||| |||||| ||| ||||||| || |||| |||||||||    
T  10490167 agcaaatccgtggcaagttgtaattcgggtaaacttacttaggattaatggattggaggtcatcatagatgattattatgttattaatcccagatagcaa 10490068  T
Q  270 gtggcatgtagcgccgaaccccaaaaatgctatagtggtatagtagatagcgagaaagtcactattgtcaatc 342  Q
    | ||| |||||||||||||  |||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  10490067 gcggcctgtagcgccgaacttcaaaaatgctatagcggtatagtagatagcgagaaagccactattgtcaatc 10489995  T

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Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 321
Target Start/End: Complemental strand, 10508955 - 10508708
Alignment:
Q  62 ttctttctagtgttgatggggtgcaggacctgtccattaatgtggagaagcaaagggtaacatatcaacttccaagacttgtattcatcaacagtcttga 161  Q
    |||||||| |||||||||||||||| |||| |||||||  ||| || ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||    
T  10508955 ttctttctggtgttgatggggtgcaagaccagtccattgctgttgataagcaaatggtaacatatcaacttccaagacttgtattcatcgacaatcttga 10508856  T
Q  162 ctacaaggaagcagatccgtgggaagttgtagatcaggtaaacttaattagattaatggatttgaggtcattatagatcattcttatgttgtttatccaa 261  Q
    | |||||| |||  | | ||||||||||||  ||||||||||||   ||||||||||||||| || |||||        ||||| |||||||| |||| |    
T  10508855 ccacaagggagccaacctgtgggaagttgtgaatcaggtaaact---ttagattaatggattggatgtcat------cgattctaatgttgttaatccca 10508765  T
Q  262 gatagcaagtggcatgtagcgccgaaccccaaaaatgctatagtggtatagtagatagcg 321  Q
     ||||| |||||  ||| ||||| ||||||||||   |||||||||||||||||||||||    
T  10508764 aatagcgagtgggttgttgcgccaaaccccaaaa---ctatagtggtatagtagatagcg 10508708  T

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Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 10464743 - 10464589
Alignment:
Q  69 tagtgttgatggggtgcaggacctgtccattaatgtggagaagcaaagggtaacatatcaacttccaagacttgtattcatcaacagtcttgactacaag 168  Q
    |||||||||||||||||||  ||  ||||||  |||  | ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |||    
T  10464743 tagtgttgatggggtgcagagccactccattgttgtcaataagcaaatggtaacatatcaacttccaagacttgtattcatcaacaatcttgaccagaag 10464644  T
Q  169 gaagcagatccgtgggaagttgtagatcaggtaaacttaattagattaatggatt 223  Q
    | |||| ||||||||||||||||  |||||||||||||| |||||||||||||||    
T  10464643 ggagcaaatccgtgggaagttgtgaatcaggtaaacttacttagattaatggatt 10464589  T

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Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 10519625 - 10519481
Alignment:
Q  62 ttctttctagtgttgatggggtgcaggacctgtccattaatgtggagaagcaaagggtaacatatcaacttccaagacttgtattcatcaacagtcttga 161  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||| ||||||| | ||||||||||||||||||||||||||||| ||||   ||||||    
T  10519625 ttctttctagcgttgatggggtgcaggaccagtccattgctgtggataagcaaatgataacatatcaacttccaagacttgtattcgtcaatgatcttga 10519526  T
Q  162 ctacaaggaagcagatccgtgggaagttgtagatcaggtaaactt 206  Q
    | | |||| |||| |||||||| ||||| || |||||||||||||    
T  10519525 ccaaaagggagcaaatccgtggcaagttttaaatcaggtaaactt 10519481  T

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Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 10546874 - 10546735
Alignment:
Q  90 cctgtccattaatgtggagaagcaaagggtaacatatcaacttccaagacttgtattcatcaacagtcttgactacaaggaagcagatccgtgggaagtt 189  Q
    ||||||||||  ||| || ||||||| | ||| ||||||||||||||||||||||| |||||||| ||||||| |||||| ||||||||||||||| |||    
T  10546874 cctgtccatttctgttgataagcaaatgataaaatatcaacttccaagacttgtatacatcaacaatcttgacaacaagggagcagatccgtgggatgtt 10546775  T
Q  190 gtagatcaggtaaacttaattagattaatggatttgaggtcat 232  Q
     || ||||||| ||||   ||||||||||||||||||||||||    
T  10546774 ttaaatcaggtgaact---ttagattaatggatttgaggtcat 10546735  T

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Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 342
Target Start/End: Original strand, 7477421 - 7477513
Alignment:
Q  250 ttgtttatccaagatagcaagtggcatgtagcgccgaaccccaaaaatgctatagtggtatagtagatagcgagaaagtcactattgtcaatc 342  Q
    ||||| |||| |||||||||  ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||||||||||||||    
T  7477421 ttgttaatcctagatagcaaacggcatgtagcgccgaaccccaaaaatgctattgcggtatagtagatagcaagaaagccactattgtcaatc 7477513  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 10447932 - 10447857
Alignment:
Q  128 aacttccaagacttgtattcatcaacagtcttgactacaaggaagcagatccgtgggaagttgtagatcaggtaaa 203  Q
    ||||||||||||||||||| ||||||| ||||||| |||||| |||| |||| ||||||||| |  ||||||||||    
T  10447932 aacttccaagacttgtatttatcaacaatcttgaccacaagggagcaaatccatgggaagttttgaatcaggtaaa 10447857  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 10850364 - 10850304
Alignment:
Q  123 atatcaacttccaagacttgtattcatcaacagtcttgactacaaggaagcagatccgtgg 183  Q
    |||||||||||||||||||||||| |||||||| ||| || |||||| |||| ||||||||    
T  10850364 atatcaacttccaagacttgtatttatcaacagccttcaccacaagggagcaaatccgtgg 10850304  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 10475967 - 10475884
Alignment:
Q  123 atatcaacttccaagacttgtattcatcaacagtcttgactacaaggaagcagatccgtgggaagttgtagatcaggtaaactt 206  Q
    |||| |||||||||||||||| || ||||||| ||||||| | |||| |||| |||| |||| |||| || |||||||||||||    
T  10475967 atatgaacttccaagacttgtttttatcaacaatcttgaccataagggagcaaatccatggggagttttatatcaggtaaactt 10475884  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 27969133 - 27969047
Alignment:
Q  123 atatcaacttccaagacttgtattcatcaacagtcttgactacaaggaagcagatccgtgggaagttgtagatcaggtaaacttaat 209  Q
    |||| |||||||||||||| |||  || ||||  |||||| |||| | |||| |||| ||||||||| |||||||||||||||||||    
T  27969133 atataaacttccaagacttatatatattaacaaacttgaccacaatggagcaaatccctgggaagttttagatcaggtaaacttaat 27969047  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 28091454 - 28091540
Alignment:
Q  123 atatcaacttccaagacttgtattcatcaacagtcttgactacaaggaagcagatccgtgggaagttgtagatcaggtaaacttaat 209  Q
    |||| |||||||||||||| |||  || ||||  |||||| |||| | |||| |||| ||||||||| |||||||||||||||||||    
T  28091454 atataaacttccaagacttatatatattaacaaacttgaccacaatggagcaaatccctgggaagttttagatcaggtaaacttaat 28091540  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 28101686 - 28101772
Alignment:
Q  123 atatcaacttccaagacttgtattcatcaacagtcttgactacaaggaagcagatccgtgggaagttgtagatcaggtaaacttaat 209  Q
    |||| |||||||||||||| |||  || ||||  |||||| |||| | |||| |||| ||||||||| |||||||||||||||||||    
T  28101686 atataaacttccaagacttatatatattaacaaacttgaccacaatggagcaaatccctgggaagttttagatcaggtaaacttaat 28101772  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 10864204 - 10864127
Alignment:
Q  127 caacttccaagacttgtattcatcaacagtcttgactacaaggaagcagatccgtgggaagttgtagatcaggtaaac 204  Q
    ||||||||||||||| |||| || ||||  |||||| |||||| |||| |||| ||| ||||| || |||||||||||    
T  10864204 caacttccaagacttatatttataaacaaccttgaccacaagggagcaaatccatggcaagttttaaatcaggtaaac 10864127  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 267
Target Start/End: Original strand, 33577954 - 33578092
Alignment:
Q  123 atatcaacttccaagacttgtattcatcaacagtcttgactacaaggaagcagatccgtgggaagttgtagatcaggtaaacttaattagattaatggat 222  Q
    |||| |||| |||||||||| ||| ||||||| | ||||| |||||| |||| |||||||||||||| |  ||||||||||   | ||||||||||||||    
T  33577954 atataaactaccaagacttgaatttatcaacaatgttgaccacaagggagcaaatccgtgggaagttttgaatcaggtaaa---atttagattaatggat 33578050  T
Q  223 ttgaggtcattatagatcattcttatgttgtttatccaagatagc 267  Q
    | |||||||| |||    |||||||||||||| |||| |||||||    
T  33578051 tggaggtcatcata---aattcttatgttgttaatcccagatagc 33578092  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 259
Target Start/End: Original strand, 33577404 - 33577534
Alignment:
Q  123 atatcaacttccaagacttgtattcatcaacagtcttgactacaaggaagcagatccgtgggaagttgtagatcaggtaaacttaattagattaatggat 222  Q
    |||| |||| |||||||||  ||| ||||||| | ||||| |||||| |||| |||||||||||||| |  ||||||||||   | ||||||||||||||    
T  33577404 atataaactaccaagacttaaatttatcaacaatgttgaccacaagggagcaaatccgtgggaagttttgaatcaggtaaa---atttagattaatggat 33577500  T
Q  223 ttgaggtcattatagatcattcttatgttgtttatcc 259  Q
    | |||||||| |||    |||||||||||||| ||||    
T  33577501 tggaggtcatcata---aattcttatgttgttaatcc 33577534  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 380
Target Start/End: Complemental strand, 9891793 - 9891758
Alignment:
Q  345 actggaggtacttctgggcctacttatctgcctttg 380  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9891793 actggaggtacttgtgggcctacttatctgcctttg 9891758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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