View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18915_low_8 (Length: 340)
Name: NF18915_low_8
Description: NF18915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18915_low_8 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 5111834 - 5111505
Alignment:
| Q |
1 |
tagaatgattcatatattatattagttgccatgcaatatatgcacattcatttatacaagggtctaaagaaggcttaattagcggtccctccgtccttca |
100 |
Q |
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| T |
5111834 |
tagaatgattcatatattata---gttaccatgcaat----gcacattcatttatacaagggtctaaagaaggcttaattagcggtctctcggtccttca |
5111742 |
T |
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| Q |
101 |
tgatataaatgaaaggttcatatatggtgtttaaaattgaatttaatttccctatgacacctttacactgcacgcacttacacaaccgttagatcgaaat |
200 |
Q |
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| T |
5111741 |
tgatataaatgaaaggttcatatatggtgtttaaaattgaatttaatttccctatgacacc-ttacactgcacgcacttacacaaccgttagatcgaaat |
5111643 |
T |
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| Q |
201 |
aaggaacaaattggaatttgtctcactctgatcaacgactttgtggtttgctgcacagtgcaaagtatccacacacgtgtaaaaaataaagtgaata--- |
297 |
Q |
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| T |
5111642 |
---gaataaagtgaataacg----attttgatcaacgactttgtggtttgctgcacagtgcaaagtatccacacacgtgtaataaataaagtgaatatat |
5111550 |
T |
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| Q |
298 |
--tatcttacccgataaggagttttttgctaaataaatttcttca |
340 |
Q |
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| T |
5111549 |
cttatcttacccgataaggagttatttgctaaatgaatttcttca |
5111505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 127 - 292
Target Start/End: Complemental strand, 5094748 - 5094582
Alignment:
| Q |
127 |
gtgtttaaaattgaatttaatttccctatgacacctttacactgcacgcacttacacaaccgttagatcgaaataaggaa---caaattggaatttgtct |
223 |
Q |
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| T |
5094748 |
gtgtgtaaaattgaattaaatttccctatgacacct--acactgcacgcacttacacagccgttagatcgaaatgagaaaaataaaattggaatttgtct |
5094651 |
T |
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| Q |
224 |
cactctgatcaacgactttgtggtttgctgcacagtgcaaagtatccacacacgtgtaaaaaataaagt |
292 |
Q |
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| T |
5094650 |
cacttagatcaacgactttgtggtttgctgcacaatgcaaagtatccacacacgtgtaataaataaagt |
5094582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 5083517 - 5083566
Alignment:
| Q |
291 |
gtgaatatatcttacccgataaggagttttttgctaaataaatttcttca |
340 |
Q |
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| T |
5083517 |
gtgaatatatcataccagataaagagttgtttgctaaatgaatttcttca |
5083566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 5094544 - 5094495
Alignment:
| Q |
291 |
gtgaatatatcttacccgataaggagttttttgctaaataaatttcttca |
340 |
Q |
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| T |
5094544 |
gtgagtatatcatacctgataaggagttatttgctaaataaattacttca |
5094495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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