View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18916_high_1 (Length: 420)
Name: NF18916_high_1
Description: NF18916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18916_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 51679488 - 51679094
Alignment:
| Q |
19 |
tatatatgatttatgaatttgatattgtaatacctttgcaacttcattgagattggaaattggtcttcctgcatacataataattttatagacatggtta |
118 |
Q |
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| T |
51679488 |
tatatatgatttatgaatttgatattgtaatacctttgcaacttcgttgagattggaaattggtcttcctgcatacataataattttatagacatggtta |
51679389 |
T |
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| Q |
119 |
aaaataagaatattacaagttggaatattgaatataaaatcatattggattgtagaagcaagcaaggtaaatagactaaccttcagccatgaaaatggaa |
218 |
Q |
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| T |
51679388 |
aaaataagaatattacaagttggaatattgaatataacatcatattggattgtagaagcaagcaaggtaaatagactaaccttcagccatgaaaatggaa |
51679289 |
T |
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| Q |
219 |
gttgaagcaaagagaatgatgcat------atgaatatttgtgtatacttgtgacagctgagactcattttactagttctgctcattttctcagggtatg |
312 |
Q |
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| T |
51679288 |
gttgaagcaaagagaatgatgcatatgattatgaatatttgtgtatacttgtgacagctgagactcattttactagttctgctcattttctcagggtatg |
51679189 |
T |
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| Q |
313 |
taaagtaaagaggcagaggaagggagcagttaatatattgttttgagtgagaataaattatatatattgctaaaaacttgatagaagagagaaat |
407 |
Q |
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| T |
51679188 |
taaagtaaagaagcagaggaagggagcagttaatatattgttttgagtgagaataaattatatatattgctaaaaacttgatagaagagagaaat |
51679094 |
T |
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