View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18916_low_2 (Length: 404)

Name: NF18916_low_2
Description: NF18916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18916_low_2
NF18916_low_2
[»] chr4 (2 HSPs)
chr4 (2-388)||(48567117-48567503)
chr4 (299-360)||(23440203-23440266)
[»] chr3 (2 HSPs)
chr3 (126-388)||(31424444-31424704)
chr3 (187-257)||(24712975-24713044)
[»] chr8 (2 HSPs)
chr8 (190-387)||(17819481-17819675)
chr8 (276-325)||(31503122-31503171)
[»] chr2 (3 HSPs)
chr2 (278-361)||(1946006-1946091)
chr2 (156-353)||(1945795-1945995)
chr2 (288-359)||(11199759-11199829)
[»] chr1 (1 HSPs)
chr1 (192-325)||(9613087-9613220)
[»] chr5 (2 HSPs)
chr5 (191-228)||(25657829-25657866)
chr5 (276-325)||(26367774-26367823)
[»] chr7 (1 HSPs)
chr7 (276-320)||(15126857-15126901)
[»] chr6 (1 HSPs)
chr6 (192-232)||(20500283-20500323)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 2 - 388
Target Start/End: Original strand, 48567117 - 48567503
Alignment:
Q  2 atttctccgccatagttagcaatacattcaattatccctaaacattgaacttatacgacttttgaacgacattttttgtttgtcgtatactggcggttat 101  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48567117 atttccccgccgtagttagcaatacattcaattatccctaaacattgaacttataagacttttgaacgacattttttgtttgtcgtatactggcggttat 48567216  T
Q  102 caacaacttcggcaaaatttattaaaaaacttgatcactgctcaaaacgaacggagagaccggtatcagatattacataatgaatgcgtcgtatataggc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  48567217 caacaacttcggcaaaatttattaaaaaacttgatcactgctcaaaacgaacagagagaccggtatcagatattacagaatgaatgcgtcgtatataggc 48567316  T
Q  202 agaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaagatctccattaacacctaaagagaacaacaatcaccaaaaccaact 301  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  48567317 ggaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaagatctaccttaacacctaaagagaacaacaatcaccaaaaccaact 48567416  T
Q  302 tcaccacctaaatcaaacttcatcattaaacggcaacttaaaacgaaatccataaacccctttcgctcactgctcaccccaaaaaac 388  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48567417 tcaccacctaaatcaaacttcatcattaaacggcaactgaaaacgaaatccataaacccctttcgctcgctgctcaccccaaaaaac 48567503  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 23440203 - 23440266
Alignment:
Q  299 acttcaccacctaaatcaaacttcatcattaaacggcaacttaa--aacgaaatccataaaccc 360  Q
    |||||||||||||||||||||| |||||| ||||| | ||| ||  ||||||||||||||||||    
T  23440203 acttcaccacctaaatcaaactccatcataaaacgaccactgaaacaacgaaatccataaaccc 23440266  T

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Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 126 - 388
Target Start/End: Complemental strand, 31424704 - 31424444
Alignment:
Q  126 aaaaacttgatcactgctcaaaacgaacggagagaccggtatcagatattacataatgaatgcgtcgtatataggcagaacacctaaaatcaacaccata 225  Q
    |||||||||||| ||| |||| ||||||  | ||||| ||||||||  |||||| || ||  |||||||||||||| ||||| | ||| | |||||||||    
T  31424704 aaaaacttgatccctgttcaagacgaac--aaagaccagtatcagaggttacatgataaagacgtcgtatataggcggaacatccaaattaaacaccata 31424607  T
Q  226 aaagacattaaacacccatcacctaaccaagatctccatt-aacacctaaagagaacaacaatcaccaaaaccaacttcaccacctaaatcaaacttcat 324  Q
    ||| |||  |||||  ||||||||||||||||||| | || |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  31424606 aaatacacaaaacaatcatcacctaaccaagatctactttcaacacccaaa-agaacaacaatcaccaaaaccaacttcaccacctaaatcaaactccat 31424508  T
Q  325 cattaaacggcaacttaaaacgaaatccata-aacccctttcgctcactgctcaccccaaaaaac 388  Q
    || ||||| || | | || |||||||||||| | |||| ||||||| || |||||||||||||||    
T  31424507 ca-taaacagccattgaacacgaaatccatacaccccccttcgctcgctactcaccccaaaaaac 31424444  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 24713044 - 24712975
Alignment:
Q  187 gcgtcgtatataggcagaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaaga 257  Q
    |||||||||||||||  ||||| |||||  ||||||||||||||||||| ||||| |||||||||||||||    
T  24713044 gcgtcgtatataggcgaaacac-taaaaaaaacaccataaaagacattatacaccaatcacctaaccaaga 24712975  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 190 - 387
Target Start/End: Original strand, 17819481 - 17819675
Alignment:
Q  190 tcgtatataggcagaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaagatctccatt-aacacctaaagagaacaacaatc 288  Q
    ||||||||| || ||||||||||||  ||| ||||||||||||| | ||||| ||||||||||||| | || | || |||||| | | |||||| ||| |    
T  17819481 tcgtatataagcggaacacctaaaaa-aactccataaaagacatcatacaccaatcacctaaccaaaacctaccttcaacacccata-agaaca-caacc 17819577  T
Q  289 accaaaaccaacttcaccacctaaatcaaacttcatcattaaacggcaacttaaaacgaaatccataaacccctttcgctcactgctcaccccaaaaaa 387  Q
    |||||||||||||||||||||||||||||||| ||||   ||||  | ||| ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  17819578 accaaaaccaacttcaccacctaaatcaaactccatcgc-aaacaaccactgaaaacgaaatccataaacccccttcgctcgctgctcaccccaaaaaa 17819675  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 31503122 - 31503171
Alignment:
Q  276 gagaacaacaatcaccaaaaccaacttcaccacctaaatcaaacttcatc 325  Q
    |||||||| || |||||||||||||||| |||||||||||||||| ||||    
T  31503122 gagaacaagaaccaccaaaaccaacttcgccacctaaatcaaactccatc 31503171  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 361
Target Start/End: Complemental strand, 1946091 - 1946006
Alignment:
Q  278 gaacaacaatcaccaaaac-caacttcaccacctaaatcaaacttcatcattaaacggcaact-taaaacgaaatccataaacccc 361  Q
    ||||||||| ||||||||| | |||||||||||||||||||||| |||||| ||||||| |||  |||||||||||||||||||||    
T  1946091 gaacaacaaccaccaaaactccacttcaccacctaaatcaaactccatcataaaacggccactaaaaaacgaaatccataaacccc 1946006  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 353
Target Start/End: Original strand, 1945795 - 1945995
Alignment:
Q  156 agagaccggtatcagatattacataatgaatgcgtcgtatataggcagaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaa 255  Q
    ||||||||||| |  | |||||| ||| |||| ||| ||||||||| ||||||| ||||  || |||||||||||||  | ||| |||||||||||||||    
T  1945795 agagaccggtaaccaagattacaaaataaatgtgtcatatataggc-gaacacccaaaagaaataccataaaagacacaatacaaccatcacctaaccaa 1945893  T
Q  256 gatctccatt-aacacctaaagagaacaacaatcaccaaaac-caacttcaccacctaaatcaaa--cttcatcattaaacggcaact-taaaacgaaat 350  Q
     | || | || |||||  |||  ||||||||| ||||||||| | ||||||||||||||||||||  || |||||| ||||||| |||  ||||||||||    
T  1945894 aacctactttcaacactcaaac-gaacaacaaccaccaaaactccacttcaccacctaaatcaaactctccatcataaaacggccactaaaaaacgaaat 1945992  T
Q  351 cca 353  Q
    |||    
T  1945993 cca 1945995  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 11199759 - 11199829
Alignment:
Q  288 caccaaaaccaacttcaccacctaaatcaaacttcatcattaaacggcaacttaaaacgaaatccataaacc 359  Q
    ||||||||||||||||||| ||||||||||||| ||||   |||| || ||| ||||| |||||||||||||    
T  11199759 caccaaaaccaacttcaccgcctaaatcaaactccatcgcgaaac-gccactaaaaacaaaatccataaacc 11199829  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 325
Target Start/End: Original strand, 9613087 - 9613220
Alignment:
Q  192 gtatataggcagaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaagatctccatt-aacacctaaagagaacaacaatcac 290  Q
    |||||||||| ||  ||| ||||  |||||||||||| |||  |||||||||||| |||||||||| || | || |||||| ||  |||||||  | |||    
T  9613087 gtatataggcggatgaccaaaaagaaacaccataaaatacacaaaacacccatcaactaaccaagacctaccttcaacacccaat-agaacaatgaccac 9613185  T
Q  291 caaaaccaacttcaccacctaaatcaaacttcatc 325  Q
    |||| ||||||||||||||||||||||||||||||    
T  9613186 caaacccaacttcaccacctaaatcaaacttcatc 9613220  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 25657829 - 25657866
Alignment:
Q  191 cgtatataggcagaacacctaaaatcaacaccataaaa 228  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  25657829 cgtatataggcagaacacctaaaataaacaccataaaa 25657866  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 26367774 - 26367823
Alignment:
Q  276 gagaacaacaatcaccaaaaccaacttcaccacctaaatcaaacttcatc 325  Q
    ||||||||||| || |||| ||||||||||||||||| ||||||| ||||    
T  26367774 gagaacaacaaccatcaaatccaacttcaccacctaagtcaaactccatc 26367823  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 15126857 - 15126901
Alignment:
Q  276 gagaacaacaatcaccaaaaccaacttcaccacctaaatcaaact 320  Q
    ||||||||||| ||| |||| |||| |||||||||||||||||||    
T  15126857 gagaacaacaaccacaaaaaacaacatcaccacctaaatcaaact 15126901  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 20500323 - 20500283
Alignment:
Q  192 gtatataggcagaacacctaaaatcaacaccataaaagaca 232  Q
    |||||||||| ||||||| ||||| ||||||||||||||||    
T  20500323 gtatataggcggaacacccaaaataaacaccataaaagaca 20500283  T

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