View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18916_low_3 (Length: 311)
Name: NF18916_low_3
Description: NF18916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18916_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 3500150 - 3500444
Alignment:
| Q |
1 |
atcaagagaagaatctgtagagggcatttagtgcaaccaatcaaatttccaaatatataatgcattttcctatataatgaagcaattcaagcaagaaaga |
100 |
Q |
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| T |
3500150 |
atcaagagaagaatctggagaaggcatttagtgcaaccaatcaaatttccaaatatataatgcattttcctatataatgaagcaattcaagcaagaaaga |
3500249 |
T |
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| Q |
101 |
acatcaagtattaattccataagacgaacagtccatcaagcaaatcaacggaaatatttccatatatgagcgtactcaactcttgttagaggatctcaat |
200 |
Q |
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| T |
3500250 |
acatcaagtattaattccataagacgaacagtccatcaaggaaatcaacagaaatatttccatatatgagcgtactcaactcttgttagaggatctcaat |
3500349 |
T |
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| Q |
201 |
ttcctcagctgtctagattgtatcatttatattcaattcagcttatttcttattttaccaatattatacaaataaggtgttatgattattatcat |
295 |
Q |
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| T |
3500350 |
ttcctcagctgtctagattgtatcatttatattcaattcagcttatttcttattttatcaatattatataaataaggtgttatgattattatcat |
3500444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 3512679 - 3512768
Alignment:
| Q |
187 |
tagaggatctcaatttcctcagctgtctagattgtatcatttatattcaattcagcttatttcttattttaccaatattatacaaataag |
276 |
Q |
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| T |
3512679 |
tagaggatctcaatttcctcggttttctaaattgtattatttatattcaattcagcttatttcttattttaccaataatatacaaataag |
3512768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 3512426 - 3512506
Alignment:
| Q |
1 |
atcaagagaagaatctgtagagggcatttagtgcaaccaatcaaatttccaaatatataatgcattttcctatataatgaa |
81 |
Q |
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| T |
3512426 |
atcaagaggagaatctggagaaggcattaagtgcaactaataaaatttccaaatatataattcattagcctatttaatgaa |
3512506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 3512579 - 3512624
Alignment:
| Q |
125 |
cgaacagtccatcaagcaaatcaacggaaatatttccatatatgag |
170 |
Q |
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| T |
3512579 |
cgaacagtccatcaagcaaatcaacggagatatttccataaatgag |
3512624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 2353044 - 2352956
Alignment:
| Q |
1 |
atcaagagaagaatctgtagagggcatttagtgcaaccaatcaaatttccaaatatataatgcattttcctatataatgaagcaattca |
89 |
Q |
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| T |
2353044 |
atcaagagaagaatatggagaagacatttagtgcaaccaatcaaatttctaaatatataatgcattttcctatataatgaagcagttca |
2352956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 2356383 - 2356472
Alignment:
| Q |
1 |
atcaagagaagaatctgtagagggcatttagtgcaaccaatcaaatttccaaatatataatgcattttcctatataatgaagcaattcaa |
90 |
Q |
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| T |
2356383 |
atcaagagaagaatatggagaaaacatttagtgcaaccaatcaaatttctaaatatataatgcatttgcctatataatgaagcagttcaa |
2356472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 2352888 - 2352844
Alignment:
| Q |
127 |
aacagtccatcaagcaaatcaacggaaatatttccatatatgagc |
171 |
Q |
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| T |
2352888 |
aacagtccatcaagcaaatcaacggagatatttccataaatgagc |
2352844 |
T |
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