View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18916_low_5 (Length: 216)
Name: NF18916_low_5
Description: NF18916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18916_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 49503085 - 49503199
Alignment:
| Q |
43 |
cttccttgacctctaagctatatcttaacactcaagataatatagtgatcttatttaccacaactaaaattttagaaggaaaaagatggcacactttcat |
142 |
Q |
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| T |
49503085 |
cttccttgacctctaagctatatcttaacactcaagataatatagcgatcttatttaccacaactaaaattttagaaggaaaaagatggcacactttcat |
49503184 |
T |
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| Q |
143 |
ttattccttgactca |
157 |
Q |
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|||| |||||||||| |
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| T |
49503185 |
ttatgccttgactca |
49503199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 49509150 - 49509264
Alignment:
| Q |
43 |
cttccttgacctctaagctatatcttaacactcaagataatatagtgatcttatttaccacaactaaaattttagaaggaaaaagatggcacactttcat |
142 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49509150 |
cttccttgacctctaagctatatcttaacactcaagataatatagcgatcttatttaccacaactaaaattttagaaggaaaaagatggcacactttcat |
49509249 |
T |
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| Q |
143 |
ttattccttgactca |
157 |
Q |
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|||| |||||||||| |
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| T |
49509250 |
ttatgccttgactca |
49509264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 49524840 - 49524948
Alignment:
| Q |
43 |
cttccttgacctctaagctatatcttaacactcaagataatatagtgatcttatttaccacaactaaaattttagaaggaaaaagatggcacactttcat |
142 |
Q |
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|||||||||| |||||| |||||||||| || |||||||||||||||||||||||||||| ||||||| |||||| |||||| ||||| |||||||||| |
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| T |
49524840 |
cttccttgacatctaagttatatcttaattctgaagataatatagtgatcttatttaccacgactaaaaatttagagggaaaacgatggtacactttcat |
49524939 |
T |
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| Q |
143 |
ttattcctt |
151 |
Q |
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|||| |||| |
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| T |
49524940 |
ttatgcctt |
49524948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 49519861 - 49519914
Alignment:
| Q |
153 |
actcatacaactgagacgagataaaccgagtttcatactttattaaatgatgat |
206 |
Q |
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| T |
49519861 |
actcatacaactgagatgagataaaccgagtttcatactttattaaatgatgat |
49519914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 49530616 - 49530668
Alignment:
| Q |
46 |
ccttgacctctaagctatatcttaacactcaagataatatagtgatcttattt |
98 |
Q |
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|||||| ||| |||||||||||||| |||||||||||||| |||||||||||| |
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| T |
49530616 |
ccttgatctccaagctatatcttaatactcaagataatatcgtgatcttattt |
49530668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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