View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18917_high_12 (Length: 302)
Name: NF18917_high_12
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_high_12 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 72294 - 72561
Alignment:
| Q |
16 |
aatattgctattcaaaagagaagctttattaagccggatgagtttgctattctaacatatttgtttctctttattatcagatcaatcatgttggtgagac |
115 |
Q |
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| T |
72294 |
aatatcgctattcaaaagagaagctttattaagccggatgagtttgctattctaacatatttgtttctctttattatcagatcaatcatgttggtgagac |
72393 |
T |
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| Q |
116 |
catttcaatttatcggtgatattaatcagaagaaagatttttggaagctagttgtgagggttaaagacaaatgggctgttgttaaggatgggacaaacac |
215 |
Q |
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| T |
72394 |
catttcaatttatcggtgatattaatcagaagaaagatttttggaagctagttgtgagagttaaagacaaatggaccgttgttaaggatgggacaagcac |
72493 |
T |
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| Q |
216 |
tcttcaatgccccaccccctgctaaaacaacttttgtgactcctaaggtcacatttgccgttccttag |
283 |
Q |
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| T |
72494 |
tcttcaatgccccaccccctgctgaaacaactcatgtgactcctaaggtcacatttgtcgttccttag |
72561 |
T |
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Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 20993691 - 20993884
Alignment:
| Q |
16 |
aatattgctattcaaaagagaagctttattaagccgga-tgagtttgctattctaacatatttgtttctctttattatcagatcaatcatgttggtgaga |
114 |
Q |
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| T |
20993691 |
aatattgttattcaaaagagaagctttattaaggcggcctcagtttgctattctaacatatttgtttgtctttattgtcagatcaatcatgttggtgaca |
20993790 |
T |
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| Q |
115 |
ccatttcaatttatcggtgatattaatcagaagaaagatttttggaagctagttgtgagggttaaagacaaatgggctgttgttaaggatggga |
208 |
Q |
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| T |
20993791 |
ccagttcaatttattgctgatattaacccgaaaaaggatttctggaagctggctgtgagggtgaaagacaaatgggttgttgttaaggatggga |
20993884 |
T |
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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 20221102 - 20221005
Alignment:
| Q |
107 |
tggtgagaccatttcaatttatcggtgatattaatcagaagaaagatttttggaagctagttgtgagggttaaagacaaatgggctgttgttaaggat |
204 |
Q |
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| T |
20221102 |
tggtaagaccatttcaatttatcggtgatattaaccagaagaaagatttctggaagctagctgttagggttaaagacaaatgggccattgttaaggat |
20221005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 3334304 - 3334244
Alignment:
| Q |
148 |
aaagatttttggaagctagttgtgagggttaaagacaaatgggctgttgttaaggatggga |
208 |
Q |
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| T |
3334304 |
aaagatttttggaagttggctgttagggttaaagacaagtggactgtggtcaaggatggga |
3334244 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 22081621 - 22081561
Alignment:
| Q |
148 |
aaagatttttggaagctagttgtgagggttaaagacaaatgggctgttgttaaggatggga |
208 |
Q |
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| T |
22081621 |
aaagatttttggaagttggctgttagggttaaagacaagtggactgtggtcaaggatggga |
22081561 |
T |
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