View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18917_high_16 (Length: 237)
Name: NF18917_high_16
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1479826 - 1479606
Alignment:
| Q |
1 |
gtgggagggaagttgagacatctactcatctattcttacattgtgatatcttctctttaatttgtcgccttattttaaattggtttggaattaattttat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| | |||||||||||||||| |||| ||||||||||| |
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| T |
1479826 |
gtgggagggaagttgagacatctactcatctattcttacattgtgatgtctcctctttaatttggcaccttattttaaattggcttgggattaattttat |
1479727 |
T |
|
| Q |
101 |
tactcctcataatttgggtgtgcaatttgagtgttggtataatgaggcggtctctaaaagacaaaggaaaggnnnnnnngttgatttggtatgccaccat |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
1479726 |
tactcctcataatttggatgtgcaatttgagtgttggtataatgaggcggtctctaaaagacaaaggaaaggtttttttgttgatttggtgtgccaccat |
1479627 |
T |
|
| Q |
201 |
ttggttgatttggaaggaaag |
221 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
1479626 |
ttggttgacttggaaggaaag |
1479606 |
T |
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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 9936112 - 9936320
Alignment:
| Q |
12 |
gttgagacatctactcatctattcttacattgtgatatcttctctttaatttgtcgccttattttaaattggtttggaattaattttattactcctcata |
111 |
Q |
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|||||||| ||||| ||||| ||||| ||||||||| ||| |||||||||||| || ||||||||||||| | || || ||||||||||| ||||||| |
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| T |
9936112 |
gttgagacttctacccatctcttcttgcattgtgatgtctcctctttaatttggcgtggtattttaaattggctcgggatgaattttattacccctcata |
9936211 |
T |
|
| Q |
112 |
atttgggtgtgcaatttgagtgttggtataatgaggcggtctctaaaagacaaaggaaaggnnnnnnngttgatttggtatgccaccatttggttgattt |
211 |
Q |
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| T |
9936212 |
atttgtttgcgcattttgagtgttggaataatgaggtggtctcgagaaggcttaggaaagg-ttttttgttgatttggcatgccactatttggttgattt |
9936310 |
T |
|
| Q |
212 |
ggaaggaaag |
221 |
Q |
| |
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||| |||||| |
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| T |
9936311 |
ggatggaaag |
9936320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 42460469 - 42460262
Alignment:
| Q |
12 |
gttgagacatctactcatctattcttacattgtgatatcttctctttaatttgtcgccttattttaaattggtttggaattaattttattactcctcata |
111 |
Q |
| |
|
|||||||| ||||| || || || || ||||||||| ||| |||||||||||| || ||||| ||||||| | ||||| ||||||||||| ||||||| |
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| T |
42460469 |
gttgagacttctacccacctctttttgcattgtgatttctcctctttaatttggcgtggtattt-aaattggctcggaatgaattttattacccctcata |
42460371 |
T |
|
| Q |
112 |
atttgggtgtgcaatttgagtgttggtataatgaggcggtctctaaaagacaaaggaaaggnnnnnnngttgatttggtatgccaccatttggttgattt |
211 |
Q |
| |
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||||| || ||| |||||||||||| ||||||||| |||||| | ||| |||||||| |||||||||| ||||||| ||||||||||||| |
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| T |
42460370 |
atttgtttgcgcattttgagtgttggaataatgaggtggtctcgagaaggattaggaaagg-ttttttgttgatttggcatgccactatttggttgattt |
42460272 |
T |
|
| Q |
212 |
ggaaggaaag |
221 |
Q |
| |
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|||||||||| |
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| T |
42460271 |
ggaaggaaag |
42460262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 2281968 - 2282167
Alignment:
| Q |
22 |
ctactcatctattcttacattgtgatatcttctctttaatttgtcgccttattttaaattggtttggaattaattttattactcctcataatttgggtgt |
121 |
Q |
| |
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||||||| || || |||||||||||| ||| ||| |||||| || | |||||||||||| | ||||| |||||||| ||||||||||||||| ||| |
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| T |
2281968 |
ctactcacctctttttacattgtgatgtctcctcacaaatttggcgtcggattttaaattggctcggaatcaattttatcactcctcataatttgtttgt |
2282067 |
T |
|
| Q |
122 |
gcaatttgagtgttggtataatgaggcggtctctaaaagacaaaggaaaggnnnnnnngttgatttggtatgccaccatttggttgatttggaaggaaag |
221 |
Q |
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||||||||| |||| | ||||||||| || | || ||| || |||||||| |||||||||| ||| ||| |||||||| |||||||| ||||| |
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| T |
2282068 |
gcaatttgattgttagaataatgaggttgtttttagaaggcataggaaaggtttttttgttgatttggcatgtcacaatttggttaatttggaaagaaag |
2282167 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 1034018 - 1034223
Alignment:
| Q |
15 |
gagacatctactcatctattcttacattgtgatatcttctctttaatttgtcgccttattttaaattggtttggaattaattttattactcctcataatt |
114 |
Q |
| |
|
||||||||||| ||||| || || ||||||||| ||| ||| |||||||| || |||||||||| | |||| |||| ||||||||||| ||||| | |
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| T |
1034018 |
gagacatctacccatctctttttgcattgtgatgtctcctccttaatttggcgtggaattttaaattagcttggggttaactttattactccacataact |
1034117 |
T |
|
| Q |
115 |
tgggtgtgcaatttgagtgttggtataatgaggcggtctctaaaagacaaaggaaaggnnnnnnngttgatttggtatgccaccatttggttgatttgga |
214 |
Q |
| |
|
||| || |||||||| |||||| |||||||| ||| ||||| ||||| | |||||| |||||||||| | || || |||||||||||||||| |
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| T |
1034118 |
tggccgtacaatttgaatgttggagtaatgaggtggtttctaagagacataagaaagg-tttttggttgatttggcacgcgacaatttggttgatttgga |
1034216 |
T |
|
| Q |
215 |
aggaaag |
221 |
Q |
| |
|
||||||| |
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| T |
1034217 |
aggaaag |
1034223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 2921298 - 2921204
Alignment:
| Q |
18 |
acatctactcatctattcttacattgtgatatcttctctttaatttgtcgccttattttaaattggtttggaattaattttattactcctcataa |
112 |
Q |
| |
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|||||||| || |||||||||||||||||| | | || ||||| || || | |||||| |||||| | || ||||| ||||||||||||||||| |
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| T |
2921298 |
acatctacccacctattcttacattgtgatgtttccttcttaatctggcgtcgtattttgaattggctagggattaactttattactcctcataa |
2921204 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 36988748 - 36988845
Alignment:
| Q |
15 |
gagacatctactcatctattcttacattgtgatatcttctctttaatttgtcgccttattttaaattggtttggaattaattttattactcctcataa |
112 |
Q |
| |
|
||||||||||| ||| |||| |||||||||||||| | |||||| ||||| |||| ||||| |||||||| | ||||||||||| ||||| ||||| |
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| T |
36988748 |
gagacatctacacatttatttttacattgtgatatttcctctttgatttggcgccggattttgaattggttggagattaattttatcactccacataa |
36988845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 36988912 - 36988953
Alignment:
| Q |
180 |
gttgatttggtatgccaccatttggttgatttggaaggaaag |
221 |
Q |
| |
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|||||||||| |||| || ||||||||||||||||||||||| |
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| T |
36988912 |
gttgatttggcatgctactatttggttgatttggaaggaaag |
36988953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 32774483 - 32774347
Alignment:
| Q |
1 |
gtgggagggaagttgagacatctactcatctattcttacattgtgatatcttctctttaatttgtcgccttattttaaattggtttggaattaattttat |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||||||||||||||| | | ||| |||||||| || || || |||||| ||| ||||||||| | |
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| T |
32774483 |
gtgggaggcaagtggagacatctactcatcttttcttacattgtgatgtatcctcgttaatttggcgtggcatattgaattggcttgagattaattttgt |
32774384 |
T |
|
| Q |
101 |
tactcctcataatttgggtgtgcaatttgagtgttgg |
137 |
Q |
| |
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|||||| ||||| ||| | ||||||| || |||||| |
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|
| T |
32774383 |
tactccacataacttgtttatgcaattcgattgttgg |
32774347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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