View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18917_high_19 (Length: 229)

Name: NF18917_high_19
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18917_high_19
NF18917_high_19
[»] chr4 (7 HSPs)
chr4 (1-125)||(49486217-49486341)
chr4 (111-213)||(49486439-49486541)
chr4 (1-94)||(49703185-49703278)
chr4 (165-203)||(7694009-7694047)
chr4 (162-203)||(1137742-1137783)
chr4 (166-203)||(8469376-8469413)
chr4 (162-199)||(43824313-43824350)
[»] chr2 (4 HSPs)
chr2 (162-203)||(41809244-41809285)
chr2 (162-203)||(1160670-1160711)
chr2 (162-203)||(11063518-11063559)
chr2 (164-200)||(22681187-22681223)
[»] chr6 (3 HSPs)
chr6 (162-203)||(6536977-6537018)
chr6 (162-203)||(4420673-4420714)
chr6 (162-203)||(27909637-27909678)
[»] chr3 (4 HSPs)
chr3 (162-203)||(24785235-24785276)
chr3 (162-203)||(45432938-45432979)
chr3 (162-203)||(21574520-21574561)
chr3 (162-203)||(42745068-42745109)
[»] chr1 (4 HSPs)
chr1 (162-200)||(6279429-6279467)
chr1 (162-203)||(4699614-4699655)
chr1 (162-203)||(10199407-10199448)
chr1 (162-203)||(28935875-28935916)
[»] chr8 (2 HSPs)
chr8 (162-203)||(2235655-2235696)
chr8 (162-203)||(41606902-41606943)
[»] chr5 (2 HSPs)
chr5 (162-203)||(35963271-35963312)
chr5 (162-198)||(1084125-1084161)
[»] chr7 (1 HSPs)
chr7 (164-200)||(38010746-38010782)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 49486217 - 49486341
Alignment:
Q  1 tttcatacaattgttcggaatagtcatgaggaggcctttgagtgcacatagtgtagatggtcctgtgttgcaatttaagaaagaaaaaacagtggccaaa 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  49486217 tttcatacaattgttcggaatattcatgaggaggcctttgagtgcacatagtgtagatggtcctgtattgcaatttaagaaagaaaaaacagtggccaaa 49486316  T
Q  101 agtaatagagaatgaactcaaatta 125  Q
    ||||||||||||| |||||||||||    
T  49486317 agtaatagagaatcaactcaaatta 49486341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 49486439 - 49486541
Alignment:
Q  111 aatgaactcaaattatttgattataagctatttttatatgttatctcacatagcttatggaaatacgctaaaaacaacttatgaacatgtcatgtcacaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49486439 aatgaactcaaattatttgattataagctatttttatatgttatcccacatagcttatggaaatacgctaaaaacaacttatgaacatgtcatgtcacaa 49486538  T
Q  211 gtt 213  Q
    |||    
T  49486539 gtt 49486541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 49703185 - 49703278
Alignment:
Q  1 tttcatacaattgttcggaatagtcatgaggaggcctttgagtgcacatagtgtagatggtcctgtgttgcaatttaagaaagaaaaaacagtg 94  Q
    |||||||||||||||||||||| |||||||||||| ||||||| ||||||  ||| |||||||||  || ||||||||| ||| ||||||||||    
T  49703185 tttcatacaattgttcggaatattcatgaggaggcttttgagtacacataacgtaaatggtcctgcattacaatttaaggaaggaaaaacagtg 49703278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 7694047 - 7694009
Alignment:
Q  165 ttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  7694047 ttatggaaataagctgaaaacaacttatgaacatgtcat 7694009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 1137742 - 1137783
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    ||||||||||||||  || |||||||||||||||||||||||    
T  1137742 agcttatggaaataaactgaaaacaacttatgaacatgtcat 1137783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 8469413 - 8469376
Alignment:
Q  166 tatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  8469413 tatggaaataagctgaaaacaacttatgaacatgtcat 8469376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 43824313 - 43824350
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatg 199  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  43824313 agcttatggaaataagctgaaaacaacttatgaacatg 43824350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 41809285 - 41809244
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  41809285 agcttatggaaataagctaaaaacaacttatgaacatgtcat 41809244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 1160711 - 1160670
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    ||||||||||||||  |||||||||||||||| |||||||||    
T  1160711 agcttatggaaataaactaaaaacaacttatggacatgtcat 1160670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 11063518 - 11063559
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||| ||||| ||||||||||||||||| |||||||||    
T  11063518 agcttatgaaaataagctaaaaacaacttatggacatgtcat 11063559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 22681223 - 22681187
Alignment:
Q  164 cttatggaaatacgctaaaaacaacttatgaacatgt 200  Q
    |||||||||||| |||||||||| |||||||||||||    
T  22681223 cttatggaaataagctaaaaacagcttatgaacatgt 22681187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 6536977 - 6537018
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  6536977 agcttatggaaataagctgaaaacaacttatgaacatgtcat 6537018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 4420673 - 4420714
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||||||||| ||| |||||| ||||||||||||||||    
T  4420673 agcttatggaaataagctgaaaacagcttatgaacatgtcat 4420714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 27909678 - 27909637
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||||||||| ||| ||||||||||||| |||||||||    
T  27909678 agcttatggaaataagctgaaaacaacttatggacatgtcat 27909637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 24785235 - 24785276
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||| ||||| |||||||||||||||||||||||||||    
T  24785235 agcttatgtaaataagctaaaaacaacttatgaacatgtcat 24785276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 45432979 - 45432938
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  45432979 agcttatggaaataagctgaaaacaacttatgaacatgtcat 45432938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 21574520 - 21574561
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||||||||| ||||||| || ||||||||||||||||    
T  21574520 agcttatggaaataagctaaaagcagcttatgaacatgtcat 21574561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 42745068 - 42745109
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||||||||| | | |||||||||||||||||||||||    
T  42745068 agcttatggaaataagatgaaaacaacttatgaacatgtcat 42745109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 6279429 - 6279467
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgt 200  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  6279429 agcttatggaaatacgctgaaaacaacttatggacatgt 6279467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 4699655 - 4699614
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    ||||||| |||||| |||||||||| ||||||||||||||||    
T  4699655 agcttatagaaataagctaaaaacagcttatgaacatgtcat 4699614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 10199448 - 10199407
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||| ||||| ||| |||||||||||||||||||||||    
T  10199448 agcttatgaaaataagctgaaaacaacttatgaacatgtcat 10199407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 28935916 - 28935875
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||||||||| |||||||| |||||||| |||||||||    
T  28935916 agcttatggaaataagctaaaaaaaacttatggacatgtcat 28935875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 2235696 - 2235655
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||||||||  ||||||||| |||||||||||||||||    
T  2235696 agcttatggaaatgagctaaaaacgacttatgaacatgtcat 2235655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 41606943 - 41606902
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||||||||| ||| |||||||||| ||||||||||||    
T  41606943 agcttatggaaataagctgaaaacaacttttgaacatgtcat 41606902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 35963271 - 35963312
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacatgtcat 203  Q
    |||||||||||||| ||| ||||||||||||| |||||||||    
T  35963271 agcttatggaaataagctgaaaacaacttatggacatgtcat 35963312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 1084161 - 1084125
Alignment:
Q  162 agcttatggaaatacgctaaaaacaacttatgaacat 198  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  1084161 agcttatggaaataagctaaaaacaactcatgaacat 1084125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 38010746 - 38010782
Alignment:
Q  164 cttatggaaatacgctaaaaacaacttatgaacatgt 200  Q
    |||||||||||| |||||||||| |||||||||||||    
T  38010746 cttatggaaataagctaaaaacagcttatgaacatgt 38010782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University