View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18917_high_20 (Length: 229)
Name: NF18917_high_20
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_high_20 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 11212845 - 11212623
Alignment:
| Q |
7 |
ctgctgaactacaggagctgccagaatttcagactgaatcgcgagctactcagaagtagcaatggccgaaacagcagaaactttggcttgtgagtgcagg |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11212845 |
ctgctgaactaccagagctgccagaatttcagactgaatcgcgagctactcagaagtagcaatggccgaaacagcagaaactttggcttgtgagtgcagg |
11212746 |
T |
|
| Q |
107 |
tggggcgaacctgtatgcacctcaaattgagattcattgatctgggtcggcgagggactcatctccccaacataagcggagagagctagcgttctcatgt |
206 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11212745 |
tggggcgaacctgtatgcacctcagattgagattcattgatctgggttggcgagggactcatctccctaacataagcggagagagctagcgttctcatgt |
11212646 |
T |
|
| Q |
207 |
gcgtgaacgcactctactaaaaa |
229 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
11212645 |
gcgtcaacgcactctactaaaaa |
11212623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 171
Target Start/End: Complemental strand, 18485222 - 18485087
Alignment:
| Q |
36 |
cagactgaatcgcgagctactcagaagtagcaatggccgaaacagcagaaactttggcttgtgagtgcaggtggggcgaacctgtatgcacctcaaattg |
135 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| |||| |
|
|
| T |
18485222 |
cagactgaactgcgagctgctcagaagtagcaatggccgtaacagcagaaattttggcttgtgagtgcaggtggggtgaacatgtatgcacctcagattg |
18485123 |
T |
|
| Q |
136 |
agattcattgatctgggtcggcgagggactcatctc |
171 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||| |
|
|
| T |
18485122 |
tgattcattgagctgggcaagcgaggggctcatctc |
18485087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 34215899 - 34216083
Alignment:
| Q |
10 |
ctgaactacaggagctgccagaatttcagactgaatcgcgagctactcagaagtagcaatggccgaaacagcagaaactttggcttgtgagtgcaggtgg |
109 |
Q |
| |
|
||||||||| ||| | |||||||||||| ||| || |||||||| | ||||| |||||||||||||||| |||||| ||||||||||||||||||| || |
|
|
| T |
34215899 |
ctgaactaccggatccgccagaatttcaaactaaaccgcgagctgtttagaagaagcaatggccgaaacaacagaaattttggcttgtgagtgcaggcgg |
34215998 |
T |
|
| Q |
110 |
ggcgaacctgtatgcacctcaaattgagattcattgatctgggtcggcgagggactcatctccccaacataagcggagagagcta |
194 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||||||||||| | ||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
34215999 |
ggcgaacctgtatgcaccttagattgcgattcattgatctgggccagcgagggactcatctacctaacagaagcggagagagcta |
34216083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University