View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18917_high_21 (Length: 227)

Name: NF18917_high_21
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18917_high_21
NF18917_high_21
[»] chr2 (11 HSPs)
chr2 (99-227)||(1479836-1479964)
chr2 (29-81)||(33891607-33891659)
chr2 (29-81)||(33890523-33890575)
chr2 (35-81)||(5583762-5583808)
chr2 (27-81)||(19299758-19299812)
chr2 (29-81)||(12299977-12300029)
chr2 (29-81)||(15553558-15553610)
chr2 (33-81)||(19298572-19298620)
chr2 (27-81)||(12301124-12301178)
chr2 (38-79)||(5583912-5583951)
chr2 (28-68)||(7577775-7577815)
[»] scaffold1571 (1 HSPs)
scaffold1571 (27-81)||(51-105)
[»] chr8 (16 HSPs)
chr8 (27-81)||(16434545-16434599)
chr8 (27-81)||(32901575-32901629)
chr8 (28-81)||(33586494-33586547)
chr8 (30-81)||(38574685-38574736)
chr8 (27-81)||(41062-41116)
chr8 (29-81)||(8304177-8304229)
chr8 (29-76)||(44077335-44077382)
chr8 (27-81)||(16432616-16432670)
chr8 (27-81)||(38573639-38573693)
chr8 (28-77)||(7690239-7690288)
chr8 (33-81)||(30781006-30781054)
chr8 (35-81)||(8302987-8303034)
chr8 (105-186)||(9935970-9936051)
chr8 (39-81)||(32900396-32900438)
chr8 (27-68)||(27163135-27163176)
chr8 (29-81)||(30779877-30779928)
[»] chr7 (17 HSPs)
chr7 (27-81)||(31430950-31431004)
chr7 (28-81)||(25491155-25491208)
chr7 (27-81)||(17237333-17237387)
chr7 (27-81)||(25489924-25489978)
chr7 (32-81)||(9118991-9119040)
chr7 (28-81)||(31433638-31433691)
chr7 (33-81)||(25275512-25275560)
chr7 (29-81)||(37413724-37413776)
chr7 (27-81)||(9113280-9113334)
chr7 (27-77)||(17238284-17238334)
chr7 (28-81)||(25274664-25274717)
chr7 (28-77)||(31432524-31432573)
chr7 (29-75)||(48909034-48909080)
chr7 (105-186)||(42460531-42460612)
chr7 (28-81)||(47497498-47497551)
chr7 (28-81)||(48909757-48909810)
chr7 (38-77)||(43100510-43100549)
[»] chr4 (9 HSPs)
chr4 (27-81)||(7533595-7533649)
chr4 (27-81)||(7535425-7535479)
chr4 (29-79)||(16075489-16075539)
chr4 (29-75)||(45030889-45030935)
chr4 (30-81)||(2093738-2093789)
chr4 (38-81)||(45029847-45029890)
chr4 (39-81)||(30707473-30707515)
chr4 (101-150)||(2281811-2281860)
chr4 (27-68)||(34739907-34739948)
[»] chr3 (9 HSPs)
chr3 (27-81)||(16386588-16386642)
chr3 (29-81)||(24842827-24842879)
chr3 (27-81)||(22896478-22896532)
chr3 (28-81)||(54204352-54204405)
chr3 (29-81)||(22895404-22895456)
chr3 (28-81)||(24844184-24844237)
chr3 (29-81)||(4843497-4843549)
chr3 (29-81)||(4869192-4869244)
chr3 (27-79)||(15791924-15791976)
[»] scaffold1147 (1 HSPs)
scaffold1147 (28-81)||(2466-2519)
[»] scaffold0850 (2 HSPs)
scaffold0850 (27-81)||(4642-4696)
scaffold0850 (28-81)||(1457-1510)
[»] scaffold0027 (2 HSPs)
scaffold0027 (27-81)||(52591-52645)
scaffold0027 (29-81)||(51437-51489)
[»] chr6 (5 HSPs)
chr6 (29-81)||(34021798-34021850)
chr6 (104-209)||(1033871-1033976)
chr6 (27-81)||(1756061-1756115)
chr6 (105-202)||(2921350-2921447)
chr6 (39-81)||(34022812-34022853)
[»] chr1 (5 HSPs)
chr1 (27-81)||(52304271-52304325)
chr1 (28-81)||(52305341-52305394)
chr1 (29-81)||(39404666-39404718)
chr1 (29-81)||(39406135-39406187)
chr1 (29-81)||(38338290-38338342)
[»] scaffold0497 (2 HSPs)
scaffold0497 (28-81)||(305-358)
scaffold0497 (28-81)||(1547-1600)
[»] chr5 (5 HSPs)
chr5 (27-81)||(2667803-2667857)
chr5 (29-81)||(14401332-14401384)
chr5 (30-81)||(2668938-2668988)
chr5 (27-68)||(11956158-11956199)
chr5 (27-68)||(41065654-41065695)
[»] scaffold0048 (1 HSPs)
scaffold0048 (28-77)||(50131-50180)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 1479964 - 1479836
Alignment:
Q  99 ctttgctttggaatagtccggctccttccaaagtagtggccttctcttggtcgttattacttgatcgcattcctacgagggaaaatctagccattcgccc 198  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||     
T  1479964 ctttgctttggaagagttcggctccttccaaagtagtggccttctcttggttgttattacttgatcgcattcctacgaggaaaagtctagccattcgcca 1479865  T
Q  199 tatccttgacccgggtgcgtccttacttt 227  Q
    |||||||||||||||||| ||||||||||    
T  1479864 tatccttgacccgggtgcatccttacttt 1479836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 33891607 - 33891659
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33891607 ttacaggggctaaaaccaaaagtgcactatattacaggggccaaaaacactat 33891659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 33890575 - 33890523
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  33890575 ttacagggactaaaacaaaaagcgcactatattacaggggccaaaaacactat 33890523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 5583808 - 5583762
Alignment:
Q  35 ggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  5583808 ggactaaaaccaaaagtgcactatattacagcggccaaaaacactat 5583762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 19299758 - 19299812
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| |||||||||||||||| ||||||||||||||| |||||||||||    
T  19299758 ttttacaggggctaaaaccaaaagtgctctatattacaggggctaaaaacactat 19299812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 12300029 - 12299977
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||| | ||||||||||||| |||||||||||||||||||||||||||||    
T  12300029 ttacaggaattaaaaccaaaagtacactatattacaggggccaaaaacactat 12299977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 15553558 - 15553610
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||| |||||||||||| ||||| |||||||||| ||||||||||||||    
T  15553558 ttacaggggctaaaaccaaaaatgcaccatattacaggagccaaaaacactat 15553610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 19298620 - 19298572
Alignment:
Q  33 agggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||| |||||||||||||| ||||||||||||||| |||||||||||||    
T  19298620 aggggctaaaaccaaaagtccactatattacagggaccaaaaacactat 19298572  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 12301124 - 12301178
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||||||  ||||||| ||||||| ||||||| |||||||||||||||||||    
T  12301124 ttttacaggggttaaaaccgaaagtgcgctatattgcaggggccaaaaacactat 12301178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 5583912 - 5583951
Alignment:
Q  38 ctaaaaccaaaagtgcactatattacaggggccaaaaacact 79  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  5583912 ctaaaaccaaaagtgcactat--tacaggggccaaaaacact 5583951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 7577775 - 7577815
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacagggg 68  Q
    |||||||||  ||||||||||||||| ||||||||||||||    
T  7577775 tttacagggggtaaaaccaaaagtgccctatattacagggg 7577815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1571 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1571
Description:

Target: scaffold1571; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 105 - 51
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  105 ttttacaggggctaaaaccaaaagtgcactatattacaggggccaaaaacactat 51  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 16434545 - 16434599
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16434545 ttttacaggggctaaaaccaaaagtgcactatattacaggggccaaaaacactat 16434599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 32901575 - 32901629
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  32901575 ttttacaggggctaaaaccaaaagtgcactatattacaggggtcaaaaacactat 32901629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 33586494 - 33586547
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  33586494 tttacaggggctaaaaccaaaagtgcactatattacagggaccaaaaacactat 33586547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 38574685 - 38574736
Alignment:
Q  30 tacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  38574685 tacaggggctaaaaccaaaagtacactatattacaggggccaaaaacactat 38574736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 41062 - 41116
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||    
T  41062 ttttacaggggctaaaactaaaagtgcactatattagaggggccaaaaacactat 41116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 8304177 - 8304229
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||||||||||    
T  8304177 ttacaggggctaaaatcaaaagtgcactatattacagggaccaaaaacactat 8304229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 44077335 - 44077382
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaac 76  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||    
T  44077335 ttacagggactaaaaccaaaagtgcactatattacagggatcaaaaac 44077382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 16432670 - 16432616
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| |||||| |||||||||||||||||||||| | ||||||||||||    
T  16432670 ttttacaggggctaaaatcaaaagtgcactatattacaggagtcaaaaacactat 16432616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 38573693 - 38573639
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| | |||| |||||||||||||||||||||||| ||||||||||||    
T  38573693 ttttacaggggcaaaaatcaaaagtgcactatattacaggggtcaaaaacactat 38573639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 7690288 - 7690239
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaaca 77  Q
    |||||| || ||||||||||||||||||||||||||||| ||||||||||    
T  7690288 tttacaagggctaaaaccaaaagtgcactatattacaggagccaaaaaca 7690239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 30781006 - 30781054
Alignment:
Q  33 agggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||||    
T  30781006 aggggctaaaaccaaaagtgcaccatattacaagggccaaaaacactat 30781054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 8303034 - 8302987
Alignment:
Q  35 ggactaaaaccaaaagtgcactatattaca-ggggccaaaaacactat 81  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||    
T  8303034 ggactaaaaccaaaagtgcactatattatagggggccaaaaacactat 8302987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 9935970 - 9936051
Alignment:
Q  105 tttggaatagtccggctccttccaaagtagtggccttctcttggtcgttattacttgatcgcattcctacgagggaaaatct 186  Q
    ||||||| |||||||||||||||||||||||  | |||| ||||||  || | |||||||| |||||||||| ||| |||||    
T  9935970 tttggaagagtccggctccttccaaagtagtcacattctattggtccctacttcttgatcgtattcctacgaaggataatct 9936051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 32900438 - 32900396
Alignment:
Q  39 taaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||    
T  32900438 taaaatcaaaagtgcgctatattacaggggacaaaaacactat 32900396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 27163176 - 27163135
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacagggg 68  Q
    |||||||||| | |||||||||||||| ||||||||||||||    
T  27163176 ttttacaggggccaaaaccaaaagtgccctatattacagggg 27163135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 30779928 - 30779877
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||| || |||||||||||||| ||| |||||||| ||||||||||||||||    
T  30779928 ttacaagggctaaaaccaaaagtacaccatattaca-gggccaaaaacactat 30779877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 31431004 - 31430950
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31431004 ttttacaggggctaaaaccaaaagtgcactatattacaggggccaaaaacactat 31430950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 25491155 - 25491208
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25491155 tttacaggggctaaaaccaaaagtgcactatattacaggggccaaaaacactat 25491208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 17237387 - 17237333
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  17237387 ttttacaggggctaaaaccaaaagtgcactatattacaggggccaaaaatactat 17237333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 25489978 - 25489924
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  25489978 ttttacaggggctaaaaccaaaagtgcactatattacaggggtcaaaaacactat 25489924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 9118991 - 9119040
Alignment:
Q  32 cagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9118991 caggggctaaaaccaaaagtgcactatattacaggggccaaaaacactat 9119040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 31433638 - 31433691
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  31433638 tttacaggggctaaaaccaaaagtgcactatattacagaggccaaaaacactat 31433691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 25275512 - 25275560
Alignment:
Q  33 agggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25275512 aggggctaaaaccaaaagtgcactatattacaggggccaaaaacactat 25275560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 37413776 - 37413724
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  37413776 ttacagggactaaaactaaaagtgcactatattacaggggccaaaagcactat 37413724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 9113334 - 9113280
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||| ||||||||||||||||||||||||| | |||||||||||||||||||    
T  9113334 ttttacaaggactaaaaccaaaagtgcactatactgcaggggccaaaaacactat 9113280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 17238284 - 17238334
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaaca 77  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  17238284 ttttacaggggctaaaaccaaaagtgcattatattacaggggccaaaaaca 17238334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 25274717 - 25274664
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  25274717 tttacaggggttaaaactaaaagtgcactatattacaggggccaaaaacactat 25274664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 31432573 - 31432524
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaaca 77  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||    
T  31432573 tttacaagggctaaaaccaaaagtgcactatattacaggggccaaaaaca 31432524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 48909080 - 48909034
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaa 75  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||    
T  48909080 ttacaggtgctaaaaccaaaagtgcactatattacaggggccaaaaa 48909034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 42460612 - 42460531
Alignment:
Q  105 tttggaatagtccggctccttccaaagtagtggccttctcttggtcgttattacttgatcgcattcctacgagggaaaatct 186  Q
    ||||||| |||||||||||||||||||||||| | ||||||||| |  || | |||||| |||||||||||| ||| |||||    
T  42460612 tttggaagagtccggctccttccaaagtagtgacgttctcttgggcactactccttgattgcattcctacgaaggataatct 42460531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 47497498 - 47497551
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||| | ||||||||||||||||||||||||| || |||||||||||||||    
T  47497498 tttacagaggctaaaaccaaaagtgcactatattatagaggccaaaaacactat 47497551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 48909757 - 48909810
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||||| |||||||||||||| ||||||||||||| |  ||||||||||||    
T  48909757 tttacaggggctaaaaccaaaagtacactatattacagagatcaaaaacactat 48909810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 43100549 - 43100510
Alignment:
Q  38 ctaaaaccaaaagtgcactatattacaggggccaaaaaca 77  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  43100549 ctaaaatcaaaagtgcactatattacagcggccaaaaaca 43100510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 7533649 - 7533595
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7533649 ttttacaggggctaaaaccaaaagtgcactatattacaggggccaaaaacactat 7533595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 7535425 - 7535479
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7535425 ttttacaggggctaaaaccaaaagtgcactatattacaggggccaaaaacactat 7535479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 16075539 - 16075489
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacact 79  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  16075539 ttacaggggctaaaaccaaaagtgcattatattgcaggggccaaaaacact 16075489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 45030889 - 45030935
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaa 75  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  45030889 ttacaggggctaaaaccacaagtgcactatattacaggggccaaaaa 45030935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 2093738 - 2093789
Alignment:
Q  30 tacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||| ||||    
T  2093738 tacagagactaaaaccaaaattgcactatattacagggaccaaaaaccctat 2093789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 45029890 - 45029847
Alignment:
Q  38 ctaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||    
T  45029890 ctaaaacgaaaagtgcactatattacaggggtcaaaaacactat 45029847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 30707473 - 30707515
Alignment:
Q  39 taaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  30707473 taaaaccaaaagtgcactatattataggggccaaaaatactat 30707515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 2281811 - 2281860
Alignment:
Q  101 ttgctttggaatagtccggctccttccaaagtagtggccttctcttggtc 150  Q
    ||||||||||| |||||| |||| |||||||||||||  |||||||||||    
T  2281811 ttgctttggaagagtccgactccatccaaagtagtggtgttctcttggtc 2281860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 34739948 - 34739907
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacagggg 68  Q
    |||||||||| | |||||||||||||| ||||||||||||||    
T  34739948 ttttacaggggccaaaaccaaaagtgccctatattacagggg 34739907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 16386588 - 16386642
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16386588 ttttacaggggctaaaaccaaaagtgcactatattacaggggccaaaaacactat 16386642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 24842879 - 24842827
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24842879 ttacaggggctaaaaccaaaagtgcactatattacaggggccaaaaacactat 24842827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 22896478 - 22896532
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  22896478 ttttacaggggctaaaaccaaaagtgcactatattacaggggtcaaaaacactat 22896532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 54204405 - 54204352
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  54204405 tttataggggctaaaaccaaaagtgcactatattacaggggccaaaaacactat 54204352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 22895456 - 22895404
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  22895456 ttacaggggctaaaaccaaaagtgcactatattacaggggtcaaaaacactat 22895404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 24844184 - 24844237
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||    
T  24844184 tttacagaggctaaaaccaaaagtgcactatattacaagggccaaaaacactat 24844237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 4843497 - 4843549
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||| ||||||||||||||||| |||||||||  |||||||||||||||    
T  4843497 ttacaggggctaaaaccaaaagtgcattatattacaaaggccaaaaacactat 4843549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 4869192 - 4869244
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||| ||||||||||||||||| |||||||||  |||||||||||||||    
T  4869192 ttacaggggctaaaaccaaaagtgcattatattacaaaggccaaaaacactat 4869244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 15791924 - 15791976
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacact 79  Q
    ||||||||||  ||||| ||||| ||||| |||||||||||| ||||||||||    
T  15791924 ttttacaggggttaaaatcaaaaatgcaccatattacaggggtcaaaaacact 15791976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1147 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold1147
Description:

Target: scaffold1147; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 2519 - 2466
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2519 tttacaggggctaaaaccaaaagtgcactatattacaggggccaaaaacactat 2466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0850 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0850
Description:

Target: scaffold0850; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 4642 - 4696
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  4642 ttttacaggggctaaaaccaaaagtgcactatattacaagggccaaaaacactat 4696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0850; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 1510 - 1457
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  1510 tttacaggggctaaaaccaaaagtgcactatattacaagggccaaaaacactat 1457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 52591 - 52645
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  52591 ttttacaggggctaaaactaaaagtgcactatattacaggggccaaaaacactat 52645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 51489 - 51437
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  51489 ttacaggggctaaaatcaaaagtgcactatattacaggggccaaaaacactat 51437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 34021850 - 34021798
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  34021850 ttacaggaactaaaaccaatagtgcactatattacaggggccaaaaacactat 34021798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 1033871 - 1033976
Alignment:
Q  104 ctttggaatagtccggctccttccaaagtagtggccttctcttggtcgttattacttgatcgcattcctacgagggaaaatctagccattcgccctatcc 203  Q
    |||||||| |||||||||||||||||||| ||||| ||||||||||| ||  | |||||||| |||||   |||||| ||||||||| |||| | ||| |    
T  1033871 ctttggaagagtccggctccttccaaagttgtggcgttctcttggtccttgctccttgatcgtattccctggagggataatctagcccttcgtcatattc 1033970  T
Q  204 ttgacc 209  Q
    ||||||    
T  1033971 ttgacc 1033976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 1756115 - 1756061
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| |||||||| ||||||||| ||||||||||||||| |||||||||    
T  1756115 ttttacaggggctaaaaccgaaagtgcaccatattacaggggccagaaacactat 1756061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 2921447 - 2921350
Alignment:
Q  105 tttggaatagtccggctccttccaaagtagtggccttctcttggtcgttattacttgatcgcattcctacgagggaaaatctagccattcgccctatc 202  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||| ||| | |||||||| || || || || |  ||||| |||||||||| ||||    
T  2921447 tttggaagagtccggctccgtctaaagtagtggccttctcttggtctttacttcttgatcgaatccccactagagttaatctcgccattcgccatatc 2921350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 34022812 - 34022853
Alignment:
Q  39 taaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  34022812 taaaaccaaaagtgcactatattacagggg-caaaaacactat 34022853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 52304325 - 52304271
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||| |||||    
T  52304325 ttttacaggggctaaaaccaaaagtgcactatattacaggggtcaaaaatactat 52304271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 52305341 - 52305394
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||    
T  52305341 tttacagcggctaaaaccaaaagtgcactatattacaggggtcaaaaacactat 52305394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 39404718 - 39404666
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||||||||    
T  39404718 ttacaagggctaaaaccaaaagtgcaccatattacaggggccaaaaacactat 39404666  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 39406135 - 39406187
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  39406135 ttacaggggttaaaaccaaaagtgcaccatattacaggggccaaaaacactat 39406187  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 38338290 - 38338342
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||||  |||||||||| ||||| |||||||||||| |||||||||||||    
T  38338290 ttacaggggttaaaaccaaatgtgcattatattacagggcccaaaaacactat 38338342  T

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Target: scaffold0497 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 358 - 305
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||||||||||||    
T  358 tttacaggggctaaaaccaaaagtgctctatatcacaggggccaaaaacactat 305  T

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Target: scaffold0497; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 1547 - 1600
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  1547 tttacaggggctaaaaccaaaattgctctatattacaggggccaaaaacactat 1600  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 2667857 - 2667803
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||||||| |||||| ||||||||||||||||||||| | ||||||||||||    
T  2667857 ttttacagggaataaaacaaaaagtgcactatattacaggaggcaaaaacactat 2667803  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 14401384 - 14401332
Alignment:
Q  29 ttacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||| || |||||||||||||| |||||||||||||||||||||| ||||||    
T  14401384 ttacaagggctaaaaccaaaagttcactatattacaggggccaaaatcactat 14401332  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 2668938 - 2668988
Alignment:
Q  30 tacagggactaaaaccaaaagtgcactatattacaggggccaaaaacactat 81  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||||||||||||    
T  2668938 tacaggggctaaaaccaaa-gtgcactatattacaggggtcaaaaacactat 2668988  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 11956199 - 11956158
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacagggg 68  Q
    |||||||||| | |||||||||||||| ||||||||||||||    
T  11956199 ttttacaggggccaaaaccaaaagtgccctatattacagggg 11956158  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 41065654 - 41065695
Alignment:
Q  27 ttttacagggactaaaaccaaaagtgcactatattacagggg 68  Q
    |||||||||| | |||||||||||||| ||||||||||||||    
T  41065654 ttttacaggggccaaaaccaaaagtgccctatattacagggg 41065695  T

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Target: scaffold0048 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 50131 - 50180
Alignment:
Q  28 tttacagggactaaaaccaaaagtgcactatattacaggggccaaaaaca 77  Q
    |||||| || |||||||||||||| ||| |||||||| ||||||||||||    
T  50131 tttacaagggctaaaaccaaaagtccaccatattacaagggccaaaaaca 50180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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