View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18917_high_3 (Length: 688)
Name: NF18917_high_3
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 16 - 678
Target Start/End: Complemental strand, 2329003 - 2328344
Alignment:
| Q |
16 |
caacagacttgaccaaagtgcataattaagcctaggtattacatcaaaatagcataaattgttcaaatattgtgaaccaagcagcacataaagcacacat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2329003 |
caacagacttgaccaaagtgcataattaagcctagatattacatcaaaatagcataaattgttcaaatattgtgaaccaagcagcacataaagcacacat |
2328904 |
T |
|
| Q |
116 |
gcatttttctaattcaaacttgaaacataaagcacaaaacataaaaattaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2328903 |
gcatttttctaattcaaacttgaaacataaagcacaaaacataaaaattaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttc |
2328804 |
T |
|
| Q |
216 |
attagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2328803 |
attagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactt |
2328704 |
T |
|
| Q |
316 |
tggttggcctaagacattccgaatttacaactttccaagcaattgcaatttcctttttgcattcttgaatagcagcttccctagacataccatattgctt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2328703 |
tggttggcctaagacattccgaatttacaactttccaagcaattgcaatttcctttttgcattcttgaatagcagcttcccttgacataccatattgctt |
2328604 |
T |
|
| Q |
416 |
catatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaactatgtaatnnnnnnnnnnnnnntcaatgcaacaatttctattgtgtaaaaa |
515 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2328603 |
catatagcaatccagcaatgagcaaacatgtcctcttttacgttcaaactatgtaat---aaaaaaaaaaatcaatgcaacaatttctattgtgtaaaaa |
2328507 |
T |
|
| Q |
516 |
acttacattagagagaaataaagcttaaattttctatatatctagatatagatgtgatatataaatacctcactggtcacaatttcatccattagtctac |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2328506 |
acttacattagagagaaataaagcttaaattttctatatatctagatatagatgtgatatataaatacctcactggtcacaatttcatccattagtctac |
2328407 |
T |
|
| Q |
616 |
aaatagtagaaattgcatcaacaatttttggccaattagatacccacttgaaaatgttctctg |
678 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2328406 |
aaatagtagaaattgcatcaacaatttttggccaattagatacccacttgaaaatgttctctg |
2328344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 154 - 465
Target Start/End: Original strand, 14264683 - 14264994
Alignment:
| Q |
154 |
acataaaaattaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatcttt |
253 |
Q |
| |
|
||||||| ||| ||| ||||||||||| |||||| || || || |||| || |||| ||||| || |||||| | | || |||||||||| |||| | |
|
|
| T |
14264683 |
acataaacattgatgctcaaattggaattggatccaccaggacgtctttaatgtatgttttcatgagaccttcaacatgagtatagttatctttatctgt |
14264782 |
T |
|
| Q |
254 |
gtaaactacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaa |
353 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||| |||||||| |||| | |||||||| |
|
|
| T |
14264783 |
gtaaaacacatccataaaacgcgaaaaattgagagcgcgagttagaaaatccattggaacttcggttggccttagacattctttgtttatatctttccaa |
14264882 |
T |
|
| Q |
354 |
gcaattgcaatttcctttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttt |
453 |
Q |
| |
|
|| ||||||| | ||||| |||||||||||||||||||||||||| |||||||||||| || ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
14264883 |
gcgattgcaactctcttttggcattcttgaatagcagcttccctagtcataccatattgttttatatagcaatccaacaatgagcaaacatgtcctcttt |
14264982 |
T |
|
| Q |
454 |
tacgttcaaact |
465 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
14264983 |
tatgttcaaact |
14264994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 199 - 455
Target Start/End: Complemental strand, 25835054 - 25834798
Alignment:
| Q |
199 |
ctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaaacgcgcaaggttgagagcgcgggttag |
298 |
Q |
| |
|
|||||| |||| |||||| |||||||||||| ||||||| || |||| |||||||||| |||||||||||||||| || |||||||| || | || |
|
|
| T |
25835054 |
ctttgacatatttcttcataagtccttcagaatgtgtgtaattgtctttatctttgtaattcacatccataaaacgcgaaaaattgagagcacgaataag |
25834955 |
T |
|
| Q |
299 |
aaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgcaatttcctttttgcattcttgaatagcagcttcccta |
398 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
25834954 |
aaaaggcattggaactttggttggcctaagacattcctcatttatatctttccaagcaattgcaattcccttatggcattcttgaatagcagcttcccta |
25834855 |
T |
|
| Q |
399 |
gacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctctttta |
455 |
Q |
| |
|
|||||| |||| |||||||| |||||||| | |||||||||||||||| |||||||| |
|
|
| T |
25834854 |
gacatatcatactgcttcatgtagcaatccaacaatgagcaaacatgttctctttta |
25834798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 467
Target Start/End: Original strand, 41349259 - 41349562
Alignment:
| Q |
164 |
taatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactaca |
263 |
Q |
| |
|
||||| |||||| || || ||||||||||| | || ||| || ||||||||||| |||||||| | |||| ||||||||| |||||| ||||| ||| |
|
|
| T |
41349259 |
taatgctcaaataggcacgggatcaacaagtaaagatttaatgaatgacttcatttctccttcaggatgtgtaaagttatctttatctttataaaccaca |
41349358 |
T |
|
| Q |
264 |
tccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgcaa |
363 |
Q |
| |
|
||||| ||||| | | ||| ||| ||| | ||||| ||||||| ||| | ||||| | |||||||||| ||| | | ||||||||||| | ||| |
|
|
| T |
41349359 |
tccatgaaacgtgataagtttagaatgcgcatcagaaaaggcattgaaacctcggttgacataagacattctttattaatatctttccaagcatctacaa |
41349458 |
T |
|
| Q |
364 |
tttcctttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaa |
463 |
Q |
| |
|
|| |||| | ||||||||| ||| |||| ||||| ||| ||||||| |||||||||| || | |||||| |||||||| ||||||| ||||||| |
|
|
| T |
41349459 |
ttctctttcgaccttcttgaatggcaacttctctagagatattatattgcctcatatagcattccaagaatgaggaaacatgttctcttttttgttcaaa |
41349558 |
T |
|
| Q |
464 |
ctat |
467 |
Q |
| |
|
|||| |
|
|
| T |
41349559 |
ctat |
41349562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 238 - 467
Target Start/End: Complemental strand, 31201728 - 31201499
Alignment:
| Q |
238 |
agttatcttcatctttgtaaactacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccga |
337 |
Q |
| |
|
||||||||| |||||| ||||| |||||||||||||| | || || ||| ||| || ||||| ||||||||||||| ||||| |||| ||||||| |
|
|
| T |
31201728 |
agttatctttatctttataaacgacatccataaaacgtgacagatttagaatgcgtgtaagaaaaggcattggaacttcagttggtctaaaacattcctt |
31201629 |
T |
|
| Q |
338 |
atttacaactttccaagcaattgcaatttcctttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgag |
437 |
Q |
| |
|
||| | | ||||||||||| |||||| ||| | ||||||||| |||||||||||||| | | ||||||| |||||||||| || | |||||| |
|
|
| T |
31201628 |
attcatatctttccaagcatcagcaattctatttcgaccttcttgaatggcagcttccctagagacattatattgcctcatatagcattccaagaatgag |
31201529 |
T |
|
| Q |
438 |
caaacatgtcctcttttacgttcaaactat |
467 |
Q |
| |
|
||||||| |||||| ||||||||||| |
|
|
| T |
31201528 |
gtaacatgttctctttcttgttcaaactat |
31201499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 7e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 170 - 465
Target Start/End: Original strand, 20602823 - 20603118
Alignment:
| Q |
170 |
tcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccata |
269 |
Q |
| |
|
|||||||||||| |||||||| | || |||| ||| ||| |||||||||||| | |||| ||||||||||||| | |||||||| ||||||||| |
|
|
| T |
20602823 |
tcaaattggaacaggatcaaccaacacttctttaataaatgtcttcattagtccgttagaatccgtgtagttatctttgtttttgtaaataacatccata |
20602922 |
T |
|
| Q |
270 |
aaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgcaatttcct |
369 |
Q |
| |
|
||||||| ||| |||||| | | | | ||| |||||||||||||||||||||||||||||||| ||||| | |||||||| |||||| ||| | |
|
|
| T |
20602923 |
aaacgcgaaagattgagaacacaaatcataaaaggcattggaactttggttggcctaagacattcttcatttatatctttccaaacaattgtcattctat |
20603022 |
T |
|
| Q |
370 |
ttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaact |
465 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
20603023 |
ttttgcattcttgaatagcagcttctctagacatatcaaattgcttcatataacaatctaacaatgagcaaacatgtcctcttttctgttcaaact |
20603118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 170 - 464
Target Start/End: Original strand, 20621812 - 20622106
Alignment:
| Q |
170 |
tcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccata |
269 |
Q |
| |
|
|||||||||||| |||||||| | || |||| ||| | | ||||||||||| | |||| ||||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
20621812 |
tcaaattggaacaggatcaaccaacacttctttaatacaagtcttcattagtctgttagaatctgtgtagttatcttcgtttttgtaaacaacatccata |
20621911 |
T |
|
| Q |
270 |
aaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgcaatttcct |
369 |
Q |
| |
|
||||||| |||||| ||| | | || | ||| |||||||||||||||||||||||||||||||| ||||| | |||||||| |||||| ||| | |
|
|
| T |
20621912 |
aaacgcgaaaggttaagaacacaagtcataaaaggcattggaactttggttggcctaagacattcttcatttatatctttccaaacaattgtcattctat |
20622011 |
T |
|
| Q |
370 |
ttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaac |
464 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| || ||||||||||||| ||||||| |||||||||||| || |||||||| |||||||| |
|
|
| T |
20622012 |
ttttgcattcttgaatagcagcttctctcgacatatcaaattgcttcatataacaatctaacaatgagcaaacttgccctcttttctgttcaaac |
20622106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 162 - 471
Target Start/End: Complemental strand, 17183401 - 17183092
Alignment:
| Q |
162 |
attaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaacta |
261 |
Q |
| |
|
||||||| ||||||||| || ||||| ||||| | |||||| || |||| ||||||| ||||| |||| | |||||||| ||||||| || |||| || |
|
|
| T |
17183401 |
attaatgctcaaattggcaccggatctacaagcaaagctttaatgtatgtcttcatttctcctttagaatgcgtgtagttgtcttcatgcttataaatta |
17183302 |
T |
|
| Q |
262 |
catccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgc |
361 |
Q |
| |
|
||||||||||||||| || |||| | ||| |||||||| || ||||||||||||||||| |||||||||| ||||| | ||||||||||| | | |
|
|
| T |
17183301 |
catccataaaacgcgagagattgacaatgcgagttagaaaaagcgttggaactttggttggcttaagacattcttcatttatatctttccaagcattaac |
17183202 |
T |
|
| Q |
362 |
aatttcctttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttca |
461 |
Q |
| |
|
|| | |||| |||||||||||||| |||||| ||||| ||| |||| |||||||||||| || | |||||| ||||||||||||||||| ||||| |
|
|
| T |
17183201 |
aactcttttttggcattcttgaatagaagcttctctagatatattgtattccttcatatagcattccaagaatgaggaaacatgtcctcttttatgttca |
17183102 |
T |
|
| Q |
462 |
aactatgtaa |
471 |
Q |
| |
|
|||| ||||| |
|
|
| T |
17183101 |
aactgtgtaa |
17183092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 159 - 468
Target Start/End: Complemental strand, 25794490 - 25794181
Alignment:
| Q |
159 |
aaaattaatgatcaaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaa |
258 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| | |||||| || ||| ||||||| |||||||| | ||| ||||||||| |||||| |||| |
|
|
| T |
25794490 |
aaaattaatgatcaaattaacactggatctacaagcaaagctttaatgaatgtcttcatttctccttcagtgtgagtgaagttatctttatctttataaa |
25794391 |
T |
|
| Q |
259 |
ctacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaat |
358 |
Q |
| |
|
|||| ||||||||||||| |||| | | ||| | | ||| ||| ||||||| |||||| |||||||||| ||||| | ||||||||||| |
|
|
| T |
25794390 |
ctacgtccataaaacgcgataggtctaaaatgcgtctcacaaaattcataggaacttcagttggcataagacattcttcatttatatctttccaagcatc |
25794291 |
T |
|
| Q |
359 |
tgcaatttcctttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgt |
458 |
Q |
| |
|
|||| |||| || ||||||||| |||||||||||||||| | |||||| |||||||| || || || |||||| |||||||| ||||||| || |
|
|
| T |
25794290 |
aagaattctctttcggccttcttgaatggcagcttccctagacacatcatattctttcatataacactccaggaatgaggaaacatgttctcttttttgt |
25794191 |
T |
|
| Q |
459 |
tcaaactatg |
468 |
Q |
| |
|
|||||||||| |
|
|
| T |
25794190 |
tcaaactatg |
25794181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University