View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18917_low_1 (Length: 794)
Name: NF18917_low_1
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 626; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 11 - 757
Target Start/End: Complemental strand, 27261760 - 27261014
Alignment:
| Q |
11 |
atcatcatcacttagaagttacaacttgtccaacattgaatagaatcataatagcttcatccatttttaatgtccctttccatgccacatcagttttaag |
110 |
Q |
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| T |
27261760 |
atcatcatcacttagaagttacaacttgtccaacattgaatagaatcataatagcttcatccatttttaatgtccctttccatgccacatcagttttaag |
27261661 |
T |
|
| Q |
111 |
aatttcaacaattttttattccaactatgtaacatgtatctcaccttatctcactttcaacttgttttccttctcctactttcttaagtctactttttca |
210 |
Q |
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| T |
27261660 |
aatttcaacaattttttattccaactatgtaacatgtatctcaccttatctcactttcaacttgttttccttctcctactttcttaagtctactttttca |
27261561 |
T |
|
| Q |
211 |
ctttaagtcactaaagttgttgaatgtgacaaccacatgaaattcaaccatctctagtggtaaagtcaaataagaacctgttcctaacttctagagctca |
310 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27261560 |
ttttaagtcactaaagttgttgaatgtgataaccacatgaaattcaaccatctctagtggtaaagccaaataagaacctgttcctaacttctagagctca |
27261461 |
T |
|
| Q |
311 |
acaagacactactgaaaatgctctaagtagataaacatggacaataataattgaagttcattaatattatacatggtttaaccaacatgctactttgaaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261460 |
acaagacactactgaaaatgctctaagtagataaacatggacaataataattgaagttcattaatattatacatggtttaaccaacatgctactttgaaa |
27261361 |
T |
|
| Q |
411 |
actagaataccactatgcnnnnnnngaattcaaacttgcttatagatatgaatatttaacttcaagcatatttgtttaaagaactaagttcagctatact |
510 |
Q |
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| T |
27261360 |
actagaataccactatgcaaaaaaagaattcaaacttgcttatagatatgaatatttaacttcaagcatatttgtttaaagaactaagttcagctatact |
27261261 |
T |
|
| Q |
511 |
aattggcaagttttttaagttaagtatcataccgtggtcttaacgagctcattggcataggaaccagctctgatagtgagacttgatggagcggcggggg |
610 |
Q |
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| T |
27261260 |
aattggtaagttttttaagttaagtatcataccgcggtcttaacgagctcattggcataggaaccagctctgatagtgagacttgatggagcggcggggt |
27261161 |
T |
|
| Q |
611 |
tgcatcgtacagcggccacccaagaatgatcgagggggttgcccctcacccacttagacttgtcaagaacaatttatgtcttggagagagaaggcgatgc |
710 |
Q |
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|||||||||||||||||||| |||| ||| ||||| | |||| ||||||| | ||||||||||||||||||| ||| |||| ||||||| | ||||| |
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| T |
27261160 |
tgcatcgtacagcggccaccgaagattgacggagggtttggcccttcacccattcagacttgtcaagaacaattgatgacttgaagagagatgctgatgc |
27261061 |
T |
|
| Q |
711 |
agatgccattgttttctgtctaacaaaaaactgtaatcttatccctc |
757 |
Q |
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| T |
27261060 |
agatgccattgtttactgtctaacaagaaactgcaatcttatccctc |
27261014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 21193576 - 21193514
Alignment:
| Q |
540 |
taccgtggtcttaacgagctcattggcataggaaccagctctgatagtgagacttgatggagc |
602 |
Q |
| |
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||||| |||||| |||||||| | |||||||||||||||||| || || |||| ||||||||| |
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| T |
21193576 |
taccgcggtcttgacgagctcgtcggcataggaaccagctctaatggtaagacctgatggagc |
21193514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 27249349 - 27249287
Alignment:
| Q |
540 |
taccgtggtcttaacgagctcattggcataggaaccagctctgatagtgagacttgatggagc |
602 |
Q |
| |
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||||| |||||| |||||||| | |||||||||||||||||| || || |||| ||||||||| |
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| T |
27249349 |
taccgcggtcttgacgagctcgtcggcataggaaccagctctaatggtaagacctgatggagc |
27249287 |
T |
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