View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18917_low_10 (Length: 442)
Name: NF18917_low_10
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 402
Target Start/End: Original strand, 41744114 - 41744501
Alignment:
| Q |
14 |
catcaataggtttaaaaggacaaccaaaattctaaccttgcatccaatagcctagccttaacatcaataggtttaatactttataatataatcnnnnnnn |
113 |
Q |
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| T |
41744114 |
catcaataggtttaaaaggacaaccaaaattctaaccttgcatccaatagcctagccttaacatcaataggtttaatactttataatataatcttttttt |
41744213 |
T |
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| Q |
114 |
nnactattcttatggcttatcaattcatgtttacttcttgtgcatagtcacataatatggatttaaatgagatagtaatgttattaaatatgaatcaaaa |
213 |
Q |
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| T |
41744214 |
t-actattcttatggcttatcaattcatgtttacttcttgtgcatagtcacataatatggatttaaatgagatagtcatgttattaaatatggatcaaaa |
41744312 |
T |
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| Q |
214 |
tgatgtagtcatatcgattttagttatcatatgactttgtttttcttttgaaaatcgatctaaactgcaccggaaacatcttgatagtttaatcatttaa |
313 |
Q |
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| T |
41744313 |
tgatgtagtcatatcgattttagttatcatatgactttgtttttcttctgaaaatcgatctaaactgcaccggaaacatcttgatagtttaatcatttga |
41744412 |
T |
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| Q |
314 |
cacactacaaacaaaaagaatatgcccaagattgataagtaatatcttaccttgttagctaatataatgtgattgaattagaagctaat |
402 |
Q |
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| T |
41744413 |
cacactacaaacaaaaagaatatgcccaagattgataagtaatatcttaccttgttagctaatataatgtgattgaattagaagctaat |
41744501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 41746759 - 41746803
Alignment:
| Q |
398 |
ctaatcaagacgaaggatgtcaaaatatcaaatcaactgattaat |
442 |
Q |
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| T |
41746759 |
ctaatcaagacgaaggatgtcaaaatatcaaatcaactgattaat |
41746803 |
T |
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