View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18917_low_11 (Length: 426)
Name: NF18917_low_11
Description: NF18917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18917_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 28604794 - 28605191
Alignment:
| Q |
18 |
agttttactcaacttatctcataattcattccatggaagcctaccctttgaaattggcaacctgaaaagcatcaataagctggatgtttctaaaaattct |
117 |
Q |
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| T |
28604794 |
agttttactcaacttatctcataattcattccatggaagcctaccctttgaaattggcaacctgaaaagcatcaataagctggatgtttctaaaaattct |
28604893 |
T |
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| Q |
118 |
ctatctggtgaaattccttcaacaattggacaatgcataagtttggaatacctgaacttacaagggaacattttccagggagtcatgccttcatctttgg |
217 |
Q |
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| T |
28604894 |
ctatctggtgaaattccttcaacaattggacaatgcataagtttggaatacctgaacttacaagggaacattttccagggagtcatgccttcatctttgg |
28604993 |
T |
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| Q |
218 |
cttcattgaaaggccttcaatatttagatttgtcacaaaacaacttgtcaggttccattccacaaggtctagaaagtattcctgttctgcagtaattaaa |
317 |
Q |
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| T |
28604994 |
cttcattgaaaggccttcgatatttagatttgtcacaaaacaacttgtcaggttccattccacaaggtctagaaagtattcctgttctgcagtacttgaa |
28605093 |
T |
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| Q |
318 |
tatttctttcaacatgttgaatggtgaagtaccgactgaaggtgtgtttagaaatgaaagtgagatatttgtgaaaaacaatagtgacctctgtggtg |
415 |
Q |
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| T |
28605094 |
tatttcttttaacatgttgaatggtgaagtaccgactgaaggtgtgtttagaaatgaaagtgagatatttgtgaaaaacaatagtgacctttgtggtg |
28605191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 22 - 413
Target Start/End: Complemental strand, 27725090 - 27724699
Alignment:
| Q |
22 |
ttactcaacttatctcataattcattccatggaagcctaccctttgaaattggcaacctgaaaagcatcaataagctggatgtttctaaaaattctctat |
121 |
Q |
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| T |
27725090 |
ttactcaacttatcccacaactcatttaaaggaagccttccctctgaaattggtaagctgaaaagcattgataagttggatgcttctgaaaatgttcttt |
27724991 |
T |
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| Q |
122 |
ctggtgaaattccttcaacaattggacaatgcataagtttggaatacctgaacttacaagggaacattttccagggagtcatgccttcatctttggcttc |
221 |
Q |
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| T |
27724990 |
caggtgaaattccggaagaaattgggaagtgcataagcttggaataccttaacctacaaggtaactccttccatggagccatgccttcttctttggcatc |
27724891 |
T |
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| Q |
222 |
attgaaaggccttcaatatttagatttgtcacaaaacaacttgtcaggttccattccacaaggtctagaaagtattcctgttctgcagtaattaaatatt |
321 |
Q |
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| T |
27724890 |
attgaaaggccttcagtatttagatttatcacgaaacaacttgtctggatcatttccacaagatttagagagtatcccttttctacaatacttgaatatt |
27724791 |
T |
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| Q |
322 |
tctttcaacatgttgaatggtgaagtaccgactgaaggtgtgtttagaaatgaaagtgagatatttgtgaaaaacaatagtgacctctgtgg |
413 |
Q |
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| T |
27724790 |
tcttttaataggttggatggtaaagtgccaacaaagggtgtctttagaaatgtaagtgcaatatcattgaaaaacaacagtgacctttgtgg |
27724699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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